Literature DB >> 32162312

Profiles of immune-related genes and immune cell infiltration in the tumor microenvironment of diffuse lower-grade gliomas.

Xiangyang Deng1, Dongdong Lin1, Xiaojia Zhang1, Xuchao Shen1, Zelin Yang1, Liang Yang1, Xiangqi Lu1, Lisheng Yu1, Nu Zhang1, Jian Lin1.   

Abstract

The tumor microenvironment is highly correlated with tumor occurrence, progress, and prognosis. We aimed to investigate the immune-related gene (IRG) expression and immune infiltration pattern in the tumor microenvironment of lower-grade glioma (LGG). We employed the Estimation of STromal and Immune cells in MAlignant Tumor tissues using Expression data (ESTIMATE) algorithm to calculate immune and stromal scores and identify prognostic IRG based on The Cancer Genome Atlas data set. The potential molecular functions of these genes were explored with the help of functional enrichment analysis and the protein-protein interaction network. Remarkably, three cohorts that were downloaded from the Chinese Glioma Genome Atlas database were analyzed to further verify the prognostic values of these genes. Moreover, the Tumor IMmune Estimation Resource (TIMER) algorithm was used to estimate the abundance of infiltrating immune cells and explore the immune infiltration pattern in LGG. And unsupervised cluster analysis determined three clusters of the immune infiltration pattern and indicated that CD8+ T cells and macrophages were significantly associated with LGG outcomes. Altogether, our study identified a list of prognostic IRGs and provided a perspective to explore the immune infiltration pattern in LGG.
© 2020 Wiley Periodicals, Inc.

Entities:  

Keywords:  CGGA; TCGA; lower-grade glioma; prognosis; tumor microenvironment

Year:  2020        PMID: 32162312     DOI: 10.1002/jcp.29633

Source DB:  PubMed          Journal:  J Cell Physiol        ISSN: 0021-9541            Impact factor:   6.384


  25 in total

1.  Expression of m6A Regulators Correlated With Immune Microenvironment Predicts Therapeutic Efficacy and Prognosis in Gliomas.

Authors:  Shengchao Xu; Lu Tang; Gan Dai; Chengke Luo; Zhixiong Liu
Journal:  Front Cell Dev Biol       Date:  2020-11-10

2.  Pan-Cancer Analyses Reveal Prognostic Value of Osteomimicry Across 20 Solid Cancer Types.

Authors:  Changsheng Yang; Hehai Pan; Lujun Shen
Journal:  Front Mol Biosci       Date:  2020-11-05

3.  Prognostic biomarker SGSM1 and its correlation with immune infiltration in gliomas.

Authors:  Junsheng Li; Jia Wang; Yaowei Ding; Jizong Zhao; Wen Wang
Journal:  BMC Cancer       Date:  2022-04-28       Impact factor: 4.638

4.  Identification and Verification on Prognostic Index of Lower-Grade Glioma Immune-Related LncRNAs.

Authors:  Jing Wen; Youjun Wang; Lili Luo; Lu Peng; Caixia Chen; Jian Guo; Yunlong Ge; Wenjun Li; Xin Jin
Journal:  Front Oncol       Date:  2020-11-23       Impact factor: 6.244

5.  Prognostic significance of ARL9 and its methylation in low-grade glioma.

Authors:  Yutang Tan; Suojun Zhang; Qungen Xiao; Junwen Wang; Kai Zhao; Weihua Liu; Kuan Huang; Weidong Tian; Hongquan Niu; Ting Lei; Kai Shu
Journal:  Genomics       Date:  2020-08-31       Impact factor: 5.736

6.  Development and Validation of an Immune-Related Gene Pair Signature in Skin Cutaneous Melanoma.

Authors:  Ran Xie; Suwei Dong; Jie Jiang; Conghui Yang; Lanjiang Li; Sheng Zhao; Yunlei Li; Chun Wang; Shujuan Li; Yanbin Xiao; Long Chen
Journal:  Clin Cosmet Investig Dermatol       Date:  2020-12-15

7.  Immune-related genes with APA in microenvironment indicate risk stratification and clinical prognosis in grade II/III gliomas.

Authors:  Shengchao Xu; Lu Tang; Gan Dai; Chengke Luo; Zhixiong Liu
Journal:  Mol Ther Nucleic Acids       Date:  2021-02-04       Impact factor: 8.886

8.  Phosphatase and Tensin Homolog Mutation in Immune Cell Infiltration and Clinicopathological Features of Low-Grade Gliomas.

Authors:  Peng Feng; Zhenqing Li; Yuchen Li; Yuelin Zhang
Journal:  Front Mol Biosci       Date:  2020-12-10

9.  MYD88 Is a Potential Prognostic Gene and Immune Signature of Tumor Microenvironment for Gliomas.

Authors:  Qinglong Guo; Xing Xiao; Jinsen Zhang
Journal:  Front Oncol       Date:  2021-04-07       Impact factor: 6.244

10.  Role of endothelial cells in tumor microenvironment.

Authors:  Dawei Yang; Peipei Guo; Tianrui He; Charles A Powell
Journal:  Clin Transl Med       Date:  2021-06
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