| Literature DB >> 32158162 |
Dela Ayu Lestari1, Takuro Oikawa2, Sutopo Sutopo1, Endang Purbowati1, Asep Setiaji1,2,3, Edy Kurnianto1.
Abstract
AIM: This study aimed to identify the effect of the insulin-like growth factor 1 (IGF1) gene on growth, to uncover the genetic marker at the IGF1 gene, and to predict growth performance by analyzing growth models of Kejobong goats based on their genotype.Entities:
Keywords: genetic markers; goat; growth analysis; growth traits; insulin-like growth factor 1
Year: 2020 PMID: 32158162 PMCID: PMC7020124 DOI: 10.14202/vetworld.2020.127-133
Source DB: PubMed Journal: Vet World ISSN: 0972-8988
Growth models for constructing a growth model.
| Model | Function |
|---|---|
| Brody | y=A |
| Von Bertalanffy | y=A |
| Logistic | y=A/(1+B exp-C |
| Gompertz | y=A |
y=Observed body weight/body measurements, A=The estimated of mature body weight/body measurements, B=The integration constant, C=The growth rate constant, Age, the animal age in day and exp, Napier’s constant the base of the natural logarithm (2.7183)
Figure-1Polymerase chain reaction result.
Figure-2Alignment result.
Figure-3Identified single nucleotide polymorphisms.
Estimated allele and genotype frequency.
| Variable measured | Genotype | Allele | H | χ2 | |||
|---|---|---|---|---|---|---|---|
| GG | GC | CC | G | C | |||
| Frequencies | 0.43 | 0.00 | 0.57 | 0.43 | 0.57 | 0.49 | 35.00 |
| Observation | 15.00 | 0.00 | 0.20 | ||||
| Expectation | 6.43 | 17.14 | 11.42 | ||||
H=Heterozygosity; χ2=Chi-square;
= p<0.05
Significance analysis of factors affecting body weights and body measurements.
| Traits | Effect | Degree of freedom | f-value | p-value |
|---|---|---|---|---|
| BW | Genotype | 1 | 4.61* | 0.0328 |
| Group of farm | 3 | 4.42* | 0.0048 | |
| Age | 1 | 235.2* | <0.0001 | |
| Age*age | 1 | 19.33* | <0.0001 | |
| CW | Genotype | 1 | 8.26* | 0.0044 |
| Group of farm | 3 | 5.86* | 0.0007 | |
| Age | 1 | 39.44* | <0.0001 | |
| Age*age | 1 | 10.58* | 0.0013 | |
| HH | Genotype | 1 | 5.46* | 0.0202 |
| Type of birth | 2 | 3.14* | 0.0346 | |
| Age | 1 | 275.95* | <0.0001 | |
| Age*age | 1 | 62.75* | <0.0001 | |
| HW | Genotype | 1 | 4.38* | 0.0397 |
| Group of farm | 3 | 2.21* | 0.0875 | |
| Age | 1 | 60.78* | <0.0001 | |
| Age*age | 1 | 12.50* | 0.0005 | |
| HG | Genotype | 1 | 5.37* | 0.0214 |
| Group of farm | 3 | 4.54* | 0.0041 | |
| Age | 1 | 362.96* | <0.0001 | |
| Age*age | 1 | 74.62* | <0.0001 |
BW=Body weight, CW=Chest width, HH=Hip height, HW=Hip width, HG=Heart girth
Estimated genotypic effect on body weights and body measurements by linear mixed model analysis.
| Traits and measurement at eight periods | Genotypes | |
|---|---|---|
| GG | CC | |
| Body weight | ||
| BW1 | 4.12±0.21 | 3.78±0.19 |
| BW2 | 5.32±0.27 | 4.96±0.25 |
| BW3 | 6.62±0.35 | 5.98±0.33 |
| BW4 | 8.02±0.42 | 7.02±0.38 |
| BW5 | 9.19±0.47 | 7.80±0.43 |
| BW6 | 10.10±0.52 | 8.57±0.48 |
| BW7 | 11.05±0.56a | 9.16±0.52b |
| BW8 | 11.76±0.60a | 9.90±0.55b |
| Chest width | ||
| CW1 | 8.60±0.30 | 8.61±0.28 |
| CW2 | 10.56±0.64 | 9.63±0.58 |
| CW3 | 10.40±0.25a | 9.52±0.23b |
| CW4 | 10.78±0.26 | 10.12±0.23 |
| CW5 | 11.19±0.27 | 10.38±0.24 |
| CW6 | 11.40±0.27 | 10.59±0.24 |
| CW7 | 11.87±0.27a | 10.58±0.25b |
| CW8 | 12.07±0.31a | 10.80±0.29b |
| Hip height | ||
| HH1 | 37.37±1.39 | 35.75±0.88 |
| HH2 | 40.33±1.15 | 39.09±0.72 |
| HH3 | 43.19±1.30 | 42.46±0.82 |
| HH4 | 47.53±1.14a | 44.36±0.71b |
| HH5 | 47.85±1.23 | 46.15±0.77 |
| HH6 | 49.33±1.22 | 47.24±0.77 |
| HH7 | 51.26±1.33a | 48.01±0.84b |
| HH8 | 52.59±1.41 | 50.04±0.89 |
| Hip width | ||
| HW1 | 8.13±0.26 | 7.76±0.24 |
| HW2 | 9.05±0.25 | 8.01±0.23 |
| HW3 | 9.33±0.25 | 8.65±0.22 |
| HW4 | 9.60±0.52a | 9.85±0.48 |
| HW5 | 10.07±0.30 | 9.98±0.27 |
| HW6 | 10.31±0.27 | 9.96±0.25 |
| HW7 | 11.06±0.28a | 9.89±0.26b |
| HW8 | 11.55±0.26a | 10.11±0.24b |
| Heart girth | ||
| HG1 | 32.54±0.84 | 31.96±0.79 |
| HG2 | 36.75±0.78a | 34.07±0.71b |
| HG3 | 38.75±0.79 | 37.23±0.73 |
| HG4 | 42.03±0.80a | 38.94±0.73b |
| HG5 | 44.84±0.88a | 40.57±0.80b |
| HG6 | 44.86±1.01 | 43.15±0.93 |
| HG7 | 46.37±0.82a | 43.48±0.76b |
| HG8 | 48.21±0.88a | 44.29±0.80b |
In the same row, values with different superscripts are significantly different (p<0.05)
Estimated parameters of growth and goodness of fit for four different growth model for body weight and body measurements.
| Variable | Parameter | Model | |||
|---|---|---|---|---|---|
| Brody | Von Bertalanffy | Logistic | Gompertz | ||
| Body weight | A | 26.6165±0.8838 | 24.5848±0.4119 | 23.3771±0.2494 | 24.119±0.3392 |
| B | 0.8293±0.01063 | 0.394±0.006254 | 2.5904±0.07293 | 1.4256±0.02609 | |
| C | 0.007131±0.00103 | 0.01416±0.00111 | 0.02815±0.001329 | 0.01766±0.001158 | |
| σ2u | 8.0152±2.3596 | 5.1533±1.3331 | 3.7526±0.9346 | 4.5865±1.1652 | |
| σ2e | 0.3224±0.02913 | 0.3213±0.02903 | 0.3263±0.02948 | 0.3218±0.02907 | |
| GG | −3.6102±0.8251 | −4.9019±0.5525 | −5.671±0.4451 | −5.1983±0.5074 | |
| CC | −6.3733±0.6891 | −7.1133±0.5099 | −7.552±0.4252 | −7.2827±0.4759 | |
| −2 Log-likelihood | 607.7 | 606.9 | 610.7 | 607.2 | |
| AIC | 629.7 | 628.9 | 632.7 | 629.2 | |
| BIC | 646.8 | 646.0 | 6.49.8 | 646.3 | |
| Heart girth | A | 54.4743±0.7187 | 53.2477±0.6747 | 53.3279±0.4993 | 52.5766±0.5957 |
| B | 0.4103±0.01058 | 0.1565±0.004488 | 0.6127±0.01979 | 0.5006±0.01461 | |
| C | 0.01420±0.001606 | 0.01654±0.001683 | 0.02211±0.001747 | 0.01798±0.001687 | |
| σ2u | 7.7466±2.0471 | 10.8093±4.328 | 7.0365±1.8202 | 7.4281±1.9557 | |
| σ2e | 2.9037±0.2623 | 2.8952±0.2609 | 2.9038±0.2623 | 2.9024±0.2622 | |
| GG | −0.1247±0.7312 | 0.3109±0.8102 | −0.6902±0.6498 | 0.6090±0.6901 | |
| CC | −3.001±0.6906 | −2.6632±0.7726 | −3.5819±0.6211 | −2.6324±0.6511 | |
| −2 Log-likelihood | 1186.7 | 1188.6 | 1186.6 | 1186.5 | |
| AIC | 1208.7 | 1210.6 | 1208.6 | 1208.5 | |
| BIC | 1225.8 | 1227.7 | 1225.7 | 1225.7 | |
| Chest width | A | 13.2044±0.2047 | 13.1842±0.1938 | 14.0087±0.1767 | 13.6037±0.1890 |
| B | 0.3014±0.02035 | 0.1105±0.008294 | 0.4026±0.03666 | 0.3477±0.02746 | |
| C | 0.02339±0.006807 | 0.02526±0.0066994 | 0.02897±0.007371 | 0.02619±0.007088 | |
| σ2u | 0.3148±0.1220 | 0.3127±0.1212 | 0.3093±0.1198 | 0.3117±0.1208 | |
| σ2e | 1.2031±0.1087 | 1.2046±0.1088 | 1.2076±0.1091 | 1.2054±0.1089 | |
| GG | 0.2807±0.1912 | 0.2693±0.1871 | −0.3206±0.1809 | −0.02153±0.1853 | |
| CC | −0.6763±0.1736 | −0.6851±0.1709 | −1.2707±0.166 | −0.9747±0.1697 | |
| −2 Log-likelihood | 880.9 | 881.2 | 881.9 | 881.4 | |
| AIC | 902.9 | 903.2 | 903.9 | 903.4 | |
| BIC | 920.0 | 920.4 | 921.0 | 920.5 | |
| Hip height | A | 60.9893±0.6814 | 60.7061±0.6247 | 58.01±0.551 | 58.3122±0.6023 |
| B | 0.3611±0.009661 | 0.1349±0.003943 | 0.5129±0.01791 | 0.4291±0.01311 | |
| C | 0.01687±0.002045 | 0.01922±0.002103 | 0.02395±0.002234 | 0.02040±0.002134 | |
| σ2u | 7.9053±2.0794 | 7.7528±2.0352 | 7.5263±1.9715 | 7.6877±2.0166 | |
| σ2e | 3.9857±0.3601 | 3.9963±0.3610 | 4.0208±0.3633 | 4.0021±0.3616 | |
| GG | −1.9251±0.7249 | −2.0781±0.7042 | −0.9427±0.6775 | −0.7799±0.6961 | |
| CC | −4.6856±0.5687 | −4.8157±0.5513 | −3.6473±0.5289 | −3.5079 | |
| −2 Log-likelihood | 1269.5 | 1270.2 | 1271.7 | 1270.5 | |
| AIC | 1289.5 | 1290.2 | 1291.7 | 1290.5 | |
| BIC | 1305.1 | 1305.7 | 1307.2 | 1306.1 | |
| Hip width | A | 12.7384±0.3135 | 14.7988±0.2714 | 12.5354±0.2168 | 13.4782±0.2548 |
| B | 0.3621±0.02307 | 0.1349±0.009079 | 0.51±0.03891 | 0.4284±0.0297 | |
| C | 0.01499±0.004015 | 0.01737±0.00421 | 0.02213±0.00436 | 0.01855±0.004177 | |
| σ2u | 0.5232±0.1647 | 0.5104±0.159 | 0.4918±0.1515 | 0.505±0.1568 | |
| σ2e | 0.7385±0.06676 | 0.7385±0.06675 | 0.7385±0.06676 | 0.7385±0.06675 | |
| GG | 0.4472±0.2464 | −1.0273±0.2289 | 0.3342±0.2075 | −0.1896±0.2222 | |
| CC | −0.3087±0.2203 | −1.7739±0.2073 | −0.3988±0.1915 | −0.9322±0.2023 | |
| −2 Log-likelihood | 765.3 | 765.3 | 765.3 | 765.3 | |
| AIC | 787.3 | 787.3 | 787.3 | 787.3 | |
| BIC | 804.5 | 804.4 | 804.5 | 804.4 | |
AIC=Akaike information criterion, BIC=Bayesian information criterion