Literature DB >> 32158128

Selection and validation of appropriate reference genes for gene expression studies in Forsythia.

Jianshuang Shen1,2,3,4, Yutong Wu1,2,3,4, Zhiyi Jiang1,2,3,4, Yang Xu1,2,3,4, Tangchun Zheng1,2,3,4, Jia Wang1,2,3,4, Tangren Cheng1,2,3,4, Qixiang Zhang1,2,3,4, Huitang Pan1,2,3,4.   

Abstract

The qRT-PCR method has been widely used to detect gene expression level in plants, helping to understand the molecular mechanisms. However, there are few researches which focus on the selection of the internal reference genes in Forsythia. To select the appropriate reference genes of Forsythia aimed at qRT-PCR normalization, twelve candidate reference genes were selected from our transcriptome data. Their expression was assessed by RT-PCR analysis in 47 Forsythia samples, including 12 species cultivars, different organs and tissues. GeNorm, NormFinder, and BestKeeper software were used to select the appropriate reference genes, AG and PSY were used to verify the accuracy of the outcome. The results showed that UKN1 was a stable reference gene in leaves of twelve Forsythia germplasms and in different developmental stages of fruits. MTP, ABCT + MTP, and ABCT + MTP + TIP were stable reference genes in different organs. ACT and SDH were stable reference genes in different flower tissues and different developmental stages of the flower buds. When Forsythia plants were stressed with PEG or ABA, SDH + UKN1 + G6PD was the stable reference gene group for qRT-PCR. The results provided the basis for investigating the physiological and biochemical processes of Forsythia related to medicinal and ornamental properties, and drought-resistance in the level of gene expression. © Prof. H.S. Srivastava Foundation for Science and Society 2019.

Entities:  

Keywords:  Drought stress; Flower; Forsythia; Fruit; Reference genes; qRT-PCR

Year:  2019        PMID: 32158128      PMCID: PMC7036397          DOI: 10.1007/s12298-019-00731-y

Source DB:  PubMed          Journal:  Physiol Mol Biol Plants        ISSN: 0974-0430


  20 in total

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2.  Comparative transcriptome analysis identified ChlH and POLGAMMA2 in regulating yellow-leaf coloration in Forsythia.

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3.  Validation of Appropriate Reference Genes for qRT-PCR Normalization in Oat (Avena sativa L.) under UV-B and High-Light Stresses.

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