| Literature DB >> 32154456 |
Jean-Philippe Bertocchio1,2,3,4, Sandrine Genetet5,6, Lydie Da Costa5,7,8, Stephen B Walsh9, Bertrand Knebelmann10, Julie Galimand8, Lucie Bessenay11, Corinne Guitton12, Renaud De Lafaille13, Rosa Vargas-Poussou3,14,15, Dominique Eladari16,17, Isabelle Mouro-Chanteloup5,6.
Abstract
INTRODUCTION: Anion exchanger 1 (AE1) (SLC4A1 gene product) is a membrane protein expressed in both kidney and red blood cells (RBCs): it exchanges extracellular bicarbonate (HCO3 -) for intracellular chloride (Cl-) and participates in acid-base homeostasis. AE1 mutations in kidney α-intercalated cells can lead to distal renal tubular acidosis (dRTA). In RBC, AE1 (known as band 3) is also implicated in membrane stability: deletions can cause South Asian ovalocytosis (SAO).Entities:
Keywords: acidosis, renal tubular; anion exchange protein 1; erythrocyte; hematologic diseases; nephrocalcinosis; nephrolithiasis
Year: 2020 PMID: 32154456 PMCID: PMC7056926 DOI: 10.1016/j.ekir.2019.12.020
Source DB: PubMed Journal: Kidney Int Rep ISSN: 2468-0249
Characteristics of included patients at diagnosis
| Patient | Mutation | Sex | Age (yr) | Hb (g/l) | CrP (μM) | eGFR (ml/min per 1.73 m2) | CO2t (mM) | Nephrolithiasis | Nephrocalcinosis | Familial history | Dynamic test | Known RBC anomaly | Bone demineralization |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | p.R589H | M | 9 | NA | 41 | 92 | 8 | Y | N | Y | N | N | Y |
| 2 | p.R589H | F | 33 | 11.5 | 94 | 61 | 20 | Y | Y | Y | N | N | N |
| 3 | p.R589H | M | 45 | 14.9 | 115 | 57 | 21 | Y | Y | Y | Y | N | N |
| 4 | p.R589C | F | 25 | 13.2 | 73 | 89 | 22 | Y | Y | Y | Y | Iron deficiency | N |
| 5 | p.R589H | F | 2 | 13.0 | 71 | >90 | 21 | Y | Y | Y | N | N | Y |
| 6 | p.E906* | M | 30 | 17.5 | 142 | 52 | 23 | Y | Y | Y | Y | Polycythemia | N |
| 7 | p.S613F | F | 20 | 12.5 | 76 | 74 | 23 | Y | Y | Y | N | N | N |
| 8 | p.R589C | F | 2 | 11.1 | 36 | 103 | 13 | N | Y | N | N | Elliptocytes | Y |
| 9 | p.R589C | F | 1 | NA | NA | NA | NA | Y | Y | N | Y | N | NA |
| 10 | p.D905dup | M | 9 | NA | 75 | 71 | NA | Y | Y | N | Y | N | NA |
| 11 | p.E906K | M | 44 | 13.1 | 80 | 103 | 23 | Y | N | Y | Y | N | N |
| 12 | p.G609R | M | 34 | 9.4 | 196 | 36 | 8 | Y | Y | Y | N | N | NA |
| 13 | p.S525F | F | 14 | NA | 62 | 125 | 14 | Y | Y | N | Y | N | N |
| 14 | del27/p.G701D | F | 2 | 13.0 | 88 | 74 | 19 | Y | Y | N | Y | Anisocytes, macrocytes, stomatocytes | N |
| 15 | p.E90K/p.T581D/del27 | M | 9 | 13.0 | 40 | 77 | 15 | N | Y | N | N | Ovalocytes | Y |
CrP, creatininemia; eGFR, estimated glomerular filtration rate; F, female; Hb, hemoglobin; M, male; N, no; NA, information not available; Y, yes.
Distal renal tubular acidosis was assessed by a dynamic test (ΔU-BPCO2), acute acid load, and/or the furosemide−fludrocortisone test) in 8 patients. All patients experienced nephrolithiasis and/or nephrocalcinosis. Five patients had known red blood cell (RBC) morphological anomalies.
Mutations in the SLC4A1 gene expressed by included patients
| Patient | Sex | Age (yr) | Short-name mutation | Nucleotide | Protein | Type of mutation | Localization | Reference | Exon | Class ACMG 2015 | |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | M | 13 | p.R589C | c.1765C>T | p.Arg589Cys | 5 | TM6 | 15 | 14 | 315, 16 | PS3, PS4, PM1, PM2, PP3, PP5 |
| 2 | F | 41 | p.R589H | c.1766G>A | p.Arg589His | 5 | TM6 | 15 | 14 | 15–17 | PS3, PS4, PM1, PM2, PP3, PP5 |
| 3 | M | 70 | p.R589H | c.1766G>A | p.Arg589His | 5 | TM6 | 15 | 14 | 15–17 | PS3, PS4, PM1, PM2, PP3, PP5 |
| 4 | F | 30 | p.R589C | c.1765C>T | p.Arg589Cys | 5 | TM6 | 15 | 14 | 15, 16 | PS3, PS4, PM1, PM2, PP3, PP5 |
| 5 | F | 22 | p.R589H | c.1766G>A | p.Arg589His | 5 | TM6 | 15 | 14 | 15–17 | PS3, PS4, PM1, PM2, PP3, PP5 |
| 6 | M | 34 | p.E906* | c.2716G>T | p.Glu906* | 5 | C-ter | 18 | 20 | Not described | PVS1, PM1, PM2 |
| 7 | F | 55 | p.S613F | c.1838C>T | p.Ser613Phe | 5 | TM7 | 15 | 15 | 315, 17 | PS3, PM1, PM2, PP3, PP5 |
| 8 | F | 15 | p.R589C | c.1765C>T | p.Arg589Cys | 5 | TM6 | 15 | 14 | 15,16 | PS3, PS4, PM1, PM2, PP3, PP5 |
| 9 | F | 28 | p.R589C | c.1765C>T | p.Arg589Cys | 5 | TM6 | 15 | 14 | 15, 16 | PS3, PS4, PM1, PM2, PP3, PP5 |
| 10 | M | 52 | p.D905dup | c.2715_2717dup | p.Asp905dup | 4 | C-ter | 19 | 20 | Not described | PM1, PM2, PM4, PP5 |
| 11 | M | 47 | p.E906K | c.2716G>A | p.Glu906Lys | 4 | C-ter | Not described | 20 | Not described | PM1, PM2, PM5 |
| 12 | M | 29 | p.G609R | c.1825G>A | p.Gly609Arg | 5 | TM7 | 20 | 15 | 20 | PS3, PM1, PM2, PP3, PP5 |
| 13 | F | 28 | p.S525F | c.1574C>T | p.Ser525Phe | 3 | TM5 | Not described | 13 | Not described | PM1, PM2, PP3 |
| Ovalocytosis | |||||||||||
| 14 | F | 25 | p.G701D | c.2102G>A | p.Gly701Asp | 5 | ICL8-9 | 21 | 17 | 17, 21, 22 | PS3, PM1, PM2, PP3, PP5 |
| del27 | c.1199_1225del | p.Ala400_Ala408del | 4 | TM1 | 23 | 11 | Not described | PM2, PM4, PP3, PP5 | |||
| 15 | M | 11 | p.E90K | c.268G>A | p.Glu90Lys | 4 | N-ter | 24 | 5 | Not described | PS3, PM1, PM2, PP5 |
| p.T581D | c.1742C>A | p.Thr581Asn | 3 | TM6 | 25 | 14 | Not described | PM1, PM2 | |||
| del27 | c.1199_1225del | p.Ala400_Ala408del | 4 | TM1 | 23 | 11 | Not described | PM2, PM4, PP3, PP5 | |||
F, female; M, male.
A total of 18 (12 different) gene mutations were identified in 15 patients. Two were predicted in silico, whereas 10 were previously reported. Thirteen patients had dominant distal renal tubular acidosis (dRTA). Three mutations were located at the C-terminal (C-term) domain, whereas 1 was found at the N-terminal (N-term) domain and 1 in the intracellular loop (ICL) between transmembrane domain (TM) 8 and TM9. Eight, 2, and 2 were found in TM6, TM7, and TM1, respectively. Following the American College of Medical Genetics (ACMG) recommendations published previously, variants were classified into 5 categories (class 1, benign; class 2, likely benign; class 3, uncertain significance; class 4, likely pathogenic; and class 5, pathogenic) based on several criteria including population data, computational data, functional data, and segregation data. These criteria are weighted as very strong (PVS1), strong (PS1–4); moderate (PM1–6), or supporting (PP1–5). The mutations previously reported are presented with their references, as well as the references for the in vitro characterization of the mutation showing their pathogenicity.
Figure 1Localizations of mutations carried by included patients. This 2-dimensional representation of anion exchanger 1 (AE1) protein inserted into the cell membrane shows the precise localization of the 12 different mutations identified in our cohort of patients (Pt). Red dot shows the typical deletion of 27 base pairs (i.e., 9 aminoacids) found in South Asian ovalocytosis (SAO). Blue dots show the mutations involved in distal renal tubular acidosis (dRTA): light and dark dots indicate recessive and dominant mutations, respectively. The 65 missing aminoacids at the N-terminal part of the kidney isoform of AE1 (kAE1) are represented in orange. The 14 transmembrane domains (TM) belonging to the core and the gate are colored in yellow and cyan, respectively.
Biology at inclusion
| Patient | Short-name mutation | Age (yr) | Sex | WBCs (109/l) | RBCs (1012/l) | Hb (g/dl) | MCV (fl) | Platelets (109/l) | MCH (pg/cell) | MCH (g/l) | Reticulocytes (109/l) | EImax | Omin | Ohyper |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | p.R589H | 13 | M | 6.72 | 4.80 | 13.9 | 84.4 | 274 | 29.0 | 34.3 | 42.7 | 0.55 | 142 | 404 |
| 2 | p.R589H | 41 | F | 10.62 | 5.25 | 14.5 | 93.0 | 257 | 27.6 | 29.7 | 81.9 | 0.56 | 161 | 457 |
| 3 | p.R589H | 70 | M | 6.17 | 5.32 | 16.0 | 99.1 | 254 | 30.1 | 30.4 | 64.9 | 0.56 | 155 | 447 |
| 4 | p.R589C | 30 | F | 5.58 | 4.41 | 13.6 | 99.8 | 204 | 30.8 | 30.9 | 50.7 | 0.58 | 160 | 443 |
| 5 | p.R589H | 22 | F | 11.38 | 4.81 | 13.9 | 95.0 | 252 | 28.9 | 30.4 | 46.7 | 0.56 | 154 | 446 |
| 6 | p.E906* | 34 | M | 8.11 | 5.91 | 17.3 | 97.0 | 271 | 29.3 | 30.2 | 66.8 | 0.55 | 171 | 452 |
| 7 | p.S613F | 55 | F | 6.28 | 3.8 | 12.0 | 106.3 | 170 | 31.6 | 29.7 | 35.3 | 0.57 | 164 | 457 |
| 8 | p.R589C | 15 | F | 9.10 | 4.74 | 11.9 | 77.0 | 407 | 25.1 | 32.6 | 30.3 | 0.52 | 120 | 385 |
| 9 | p.R589C | 28 | F | 6.98 | 3.96 | 12.1 | 87.9 | 189 | 34.8 | 30.6 | 84.4 | 0.55 | 150 | 414 |
| 10 | p.D905dup | 52 | M | 5.29 | 5.03 | 15.0 | 90.3 | 176 | 29.8 | 33.0 | 61.9 | 0.55 | 156 | 420 |
| 11 | p.E906K | 47 | M | 5.66 | 4.47 | 12.9 | 94.2 | 272 | 28.9 | 30.6 | 80.9 | 0.58 | 154 | 452 |
| 12 | p.G609R | 29 | M | 7.81 | 4.13 | 11.5 | 87.9 | 180 | 27.8 | 31.7 | 73.9 | 0.57 | 144 | 452 |
| 13 | p.S525F | 28 | F | 4.57 | 4.59 | 13.3 | 87.1 | 240 | 29.0 | 33.3 | 47.7 | 0.58 | 155 | 456 |
| Ovalocytosis | ||||||||||||||
| 14 | del27/p.G701D | 25 | F | 10.86 | 3.58 | 14.4 | 111.7 | 488 | 40.2 | 36.0 | 190.8 | 0.29 | 79 | 240 |
| 15 | del27/p.E90K/p.T581D | 11 | M | 9.32 | 5.62 | 12.8 | 73.2 | 499 | 22.7 | 31.0 | 120.6 | 0.00 | NA | NA |
| Median | 29 | 6.98 | 4.74 | 13.6 | 93.0 | 254 | 29.0 | 30.9 | 64.9 | 0.56 | 155 | 447 | ||
| Q1 | 24 | 5.92 | 4.27 | 12.5 | 87.5 | 197 | 28.4 | 30.4 | 47.2 | 0.55 | 146 | 420 | ||
| Q3 | 44 | 9.21 | 5.14 | 14.5 | 98.1 | 273 | 30.5 | 32.8 | 81.4 | 0.57 | 159 | 452 | ||
F, female; Hb, hemoglobin; M, male; MCH, mean corpuscular hemoglobin; MCV, mean corpuscular volume in femtoliter (fl); NA, not applicable; Q1, first quartile; Q3, third quartile; RBCs, red blood cells; WBCs, white blood cells.
No patient exhibited severe anemia at the time of inclusion.
EImax: corresponds to the maximal deformability index or elongation index (EI).
Omin: reflects the surface area/volume ratio and corresponds to the osmolality at the minimal deformability in hypo-osmolar area, or at the osmolality when 50% of the red cells hemolyzed during the regular osmotic resistance test.
Ohyper: corresponds to the osmolality at half of the DImax and reflects the hydration state of the RBCs.
Figure 2Red blood cells from included patients. (Upper panels) Blood smears after May−Grünwald Giemsa coloration (MGG) in healthy controls, in patients exerting a dominant mutation in the SLC4A1 gene leading to distal renal tubular acidosis (dRTA SAO−), and patients exerting a mutation in the SLC4A1 gene leading to South Asian Ovalocytosis (SAO) in addition to the one leading to dRTA (dRTA SAO+). (Lower panels) Ektacytometry curves revealed a dramatic decrease in the elongation indexes only in the dRTA SAO+ affected patients, where they were normal in the dRTA SAO− patients.
Figure 3Transports of HCO3– and Cl– in ghosts from patients with mutations in AE1 gene and controls. (a) From circulating red blood cells (RBCs), ghosts were resealed with pyranine to measure volume and membrane surface. (b,c) Relative values of transport (k) of both (b) HCO3– and (c) Cl– were significantly decreased in patients exerting a mutation in the SLC4A1 gene leading to South Asian ovalocytosis (SAO) in addition to that leading to dRTA (dRTA SAO+), as compared to the other patients exerting a mutation in the SLC4A1 gene leading to a dRTA but without SAO (dRTA SAO−), as well as controls. (d,e) HCO3– and Cl– k and permeability (P) were correlated with each other and were strongly different in dRTA SAO+ as compared to the other.
Figure 4AE1 protein expression at red blood cell (RBC) membrane. (a) Membrane expression of AE1 was studied in ghosts from RBCs by flow cytometry with 3 different probes: EMA, Bric6, and Diego B. (b) These 3 probes recognize 3 different extracellular domains of the AE protein. (c) Coomassie staining is shown with its intensity. (d) Quantifications of the intensity of band 3 (top) and band 3/full lane (bottom) did not show any difference.