| Literature DB >> 32154203 |
Meiqin Wu1, Deqing Wu2, Chunping Hu3, Chonghuai Yan1.
Abstract
Biobanks and cohort studies are a popular topic in China these days and even in the global scientific research field. Cohorts with biological material are necessary to investigate potential biological mechanisms behind a disease and its early detection. Establishing a biobank is expensive and the long-term sustainability of biorepositories is a key issue globally. There is some published information on tools to calculate the biospecimen user fee; however, they may not be suitable for China's biobanks (as most of the biobanks in China are not for profit and are funded by government or research grants, and as such, funding is a major constraint). The limited published data also tend to be highly variable and specific to the type of biobank. The authors of this article aim to present the basis of a cost analysis model for a biobank of human biological samples of a birth cohort in Shanghai, China. The results show that it is very practical for us to consider how to build a cost model for the birth cohort biobank from the direct funds, such as storage equipment, temperature monitoring system, information management system, and so on. We conclude that by comparing the similarities and differences between China's cost model and that of other countries, this paper provides valuable information for biobankers to identify new perspectives on potential collaborators and mutual learning opportunities.Entities:
Keywords: biological specimen bank; budget; cohort study; cost analysis; sustainability
Mesh:
Year: 2020 PMID: 32154203 PMCID: PMC7046621 DOI: 10.3389/fpubh.2020.00024
Source DB: PubMed Journal: Front Public Health ISSN: 2296-2565
Figure 1Sample collection in the SBC biobank. 1. Two of nine participating hospitals recruit candidates from the pre-pregnant period, which have pre-pregnancy outpatient service. 2. The fathers-to-be were asked to give the buccal mucosa samples at any time, but mainly at this time. And the spot blood samples of the newborns' were collected 3–7 days after birth. 3. This is the phase I plan. There will be continuous long-term follow-up for the participants.
Cost considerations for setting up the SBC biobank.
| 1. Building and power supply | Physical building | XH |
| Heating, ventilation and air conditioning | XH | |
| Lighting | XH | |
| Flooring | XH | |
| Backup power | XH | |
| Access control systems | XH | |
| Security cameras | XH | |
| Fire prevention systems | XH | |
| −20°C walk-in environmental storage systems | XH | |
| 2. Equipments | Mechanical freezers (freezers, fridges, liquid nitrogen tanks) | Grants |
| Stainless steel racks | Grants | |
| Freezer boxes | Grants | |
| Barcode printers | Grants | |
| Barcode scanners | Grants | |
| Temperature monitoring system | Grants | |
| Temperature monitors | Grants | |
| Information management system | Grants | |
| Computer equipment (hardware and software) | SJTU | |
| Equipment for sample processing (centrifugal machines, biosafety cabinets) | SJTU | |
| Automatic nucleic acid extractor | SJTU | |
| Thermal cycler and Gel Doc | SJTU | |
| Sample quantization equipment | SJTU | |
| Autoclave | SJTU | |
| Water purification system | SJTU | |
| Staff | Manager, scientists, technician, data and IT manager | XH |
| Training | Equipment use, quality control and quality assurance practices, biohazard and chemical hazard training, etc. | XH |
| Building | Maintenance and repair cost | XH |
| Equipment | Annual services and recalibration | XH |
| Temperature monitoring | SMS charge | Grants |
| Telephone, internet and electricity access | XH | |
| Bio hazard waste removal and cleaning services | XH | |
| 1. Collection | Collecting tubes/vials/cups, needles, general label with barcode | Grants |
| 2. Processing | Reagent, pipets, tips | Grants |
| 3. Shipping | Transportation costs of cold chain | Grants |
| 4. Storage | Plates/tubes/vials, freezer label with barcode | Grants |
| 5. General | Other consumables including basic stationery and personal protection | Grants |
XH, Xinhua Hospital.
SJTU, Shanghai Jiao Tong University School of Medicine.
The equipment investment will be calculated in detail in .
Figure 2Maternal blood specimen processing rack diagram. 1. In order to facilitate the work of the sample assembler, we stored 0.5 ml serum, whole blood, plasma, and 1.0 ml buffy coat and red blood cell in the 1.2 ml frozen storage tubes. 2. Because the clots are not easy to take out, we stored them directly in the original tube. When we need to extract DNA, we take it out. The color of the acquisition and storage tube in the figure is set according to the color of its actual tube cover: red, 10 ml vacutainer-red top; lavender, 10 ml vacutainer-lavender top; white, cryogenic vials 1.2 ml.
Figure 4Other specimen in the SBC biobank processing rack diagram. 1. In order to facilitate the work of the sample assembler, we stored 0.5 ml serum in the 1.2 ml frozen storage tubes. 2. Because the clots are not easy to take out, we stored them directly in the original tube. When we need to extract DNA, we take it out. The color of the acquisition and storage tube in the figure is set according to the color of its actual tube cover: white (large), 200 mL urine collection cup; white (middle size), 1.5 ml cell preservation solution and buccal mucosa; white (small), cryogenic vials 1.2 ml; black, glass cryule vials 8 ml; orange, centrifuge tube; blue, cryogenic vials 5 ml; red, 6 ml vacutainer-red top.
Figure 5Freezing methods in the SBC biobank. The color of the storage tube in the figure is set according to the color of its actual tube cover: white 1.5 ml cell preservation solution and buccal mucosa and cryogenic vials 1.2 ml; blue, cryogenic vials 5 ml; red, 6 and 10 ml vacutainer-red top; orange, centrifuge tube; black, glass cryule vials 8 ml. The color of the stainless steel racks is virtual, it's actually all metallic gray.
Sample size and freezer space of the SBC biobank.
| P1 | ||||||
| Blood | 16 | 0 | 0 | 1 | 0 | 17 |
| Urine | 0 | 0 | 2 | 0 | 8 | 10 |
| P2 | ||||||
| Blood | 16 | 0 | 0 | 1 | 0 | 17 |
| Urine | 0 | 0 | 2 | 0 | 8 | 10 |
| P3 | ||||||
| Blood | 16 | 0 | 0 | 1 | 0 | 17 |
| Delivery | ||||||
| Blood | 30 | 0 | 0 | 3 | 0 | 33 |
| Placenta | 0 | 8 | 0 | 0 | 0 | 8 |
| Cord | 0 | 2 | 0 | 0 | 0 | 2 |
| Father's buccal mucosa | 1 | 0 | 0 | 0 | 0 | 1 |
| 24-Month | ||||||
| Blood | 4 | 0 | 0 | 1 | 0 | 5 |
| Urine | 0 | 0 | 0 | 0 | 2 | 2 |
| Sample size of each family | 83 | 10 | 4 | 7 | 18 | 122 |
| Sample size of 4,000 families | 332,000 | 40,000 | 16,000 | 28,000 | 72,000 | 488,000 |
| Number of freezer boxes | 4,099 (9 × 9) | 1,600 (5 × 5) | 327 (7 × 7) | 571 (7 × 7) | 2,000 (6 × 6) | 8,597 |
| Number of stainless steel racks | 205 (4 × 5) | 80 (4 × 5) | 41 (4 × 2) | 71 (4 × 2) | 250 (4 × 2) | 647 |
| Number of mechanical freezers | 8.54 (6 × 4) | 3.33 (6 × 4) | – | 3.55 (5 × 4) | 12.5 (5 × 4) | 28 |
This sample size refers only to samples that require freezer boxes, stainless steel racks, or mechanical freezers. Filter paper (stored at 20°C walk-in environmental storage systems) which collected heel blood samples of newborns and mother's hair (stored at room temperature) which collected 42-day old were not included in this part, but included in the consumables investment.
This part of the sample does not occupy the mechanical freezer space.
P1, first trimester; P2, second trimester; P3, third trimester.
Equipments investment of the SBC biobank.
| Mechanical freezers (freezers, fridges, liquid nitrogen tanks) | Haier/DW-86L728 | 55,000 | 31 | 1,705,000 |
| Stainless steel racks | Youjia | 360 | 647 | 232,920 |
| Freezer boxes | Youjia | 14 | 8,597 | 120,358 |
| Barcode printers | Brady/IP 3000 | 23,000 | 3 | 69,000 |
| Barcode scanners | Symbol/DS6708 | 1,000 | 8 | 8,000 |
| Temperature monitoring system | Haier/U-COOL | free | 1 | 0 |
| Temperature monitors | Haier/U-COOL | 3,000 | 28 | 84,000 |
| Information management system | BIMS/Haier | 200,000 | 1 | 200,000 |
| Total (RMB) | 2,419,278 |
According to the calculation in .
Consumables investment for each family of the SBC biobank.
| P1 | 21 gauge needle | BD/367287 | 0.20 | 1 | 0.20 |
| 10 ml vacutainer-red top | BD/367820 | 1.00 | 1 | 1.00 | |
| 10 ml vacutainer-lavender top | BD/367525 | 1.00 | 1 | 1.00 | |
| 200 mL urine collection cup | JND/130835 | 3.50 | 1 | 3.50 | |
| General label for collection container | BD/ Y3170707 | 0.27 | 3 | 0.81 | |
| Cryogenic vials 1.2 ml (−80°C) | Nalgene/5000-1012 | 1.35 | 16 | 21.60 | |
| Glass cryule vials 8 ml (−20°C) | CNW/VJEQ-38013-13100-100 | 3.85 | 2 | 7.70 | |
| Centrifuge tube (−80°C) | Corning/ 430791 | 1.15 | 8 | 9.20 | |
| 10 ml serological pipet | Corning /4488 | 1.85 | 1 | 1.85 | |
| Specimen/freezer label | BD/Y3076151 | 0.60 | 27 | 16.2 | |
| General | – | 1.50 | 1 | 1.50 | |
| P2 | 21 gauge needle | BD/367287 | 0.20 | 1 | 0.20 |
| 10 ml vacutainer-red top | BD/367820 | 1.00 | 1 | 1.00 | |
| 10 ml vacutainer-lavender top | BD/367525 | 1.00 | 1 | 1.00 | |
| 200 mL urine collection cup | JND/130835 | 3.50 | 1 | 3.50 | |
| General label for collection container | BD/ Y3170707 | 0.27 | 3 | 0.81 | |
| Cryogenic vials 1.2 ml (−80°C) | Nalgene/5000-1012 | 1.35 | 16 | 21.60 | |
| Glass cryule vials 8 ml(−20°C) | CNW/VJEQ-38013-13100-100 | 3.85 | 2 | 7.70 | |
| Centrifuge tube (−80°C) | Corning/ 430791 | 1.15 | 8 | 9.20 | |
| 10 ml serological pipet | Corning /4488 | 1.85 | 1 | 1.85 | |
| Specimen/freezer label | BD/Y3076151 | 0.60 | 27 | 16.20 | |
| General | – | 1.50 | 1 | 1.50 | |
| P3 | 21 gauge needle | BD/367287 | 0.20 | 1 | 0.20 |
| 10 ml vacutainer-red top | BD/367820 | 1.00 | 1.00 | ||
| 10 ml vacutainer-lavender top | BD/367525 | 1.00 | 1 | 1.00 | |
| General label for collection container | BD/Y3170707 | 0.27 | 2 | 0.54 | |
| Cryogenic vials 1.2 ml (−80°C) | Nalgene/5000-1012 | 1.35 | 16 | 21.60 | |
| Specimen/freezer Label | BD/Y3076151 | 0.60 | 17 | 10.20 | |
| General | – | 1.00 | 1 | 1.00 | |
| Delivery | 21 gauge needle | BD/367287 | 0.20 | 1 | 0.20 |
| 10 ml vacutainer-red top | BD/367820 | 1.00 | 3 | 3.00 | |
| 10 ml vacutainer-lavender top | BD/367525 | 1.00 | 3 | 3.00 | |
| Cryogenic vials 1.2 ml (−80°C) | Nalgene/5000-1012 | 1.35 | 30 | 40.50 | |
| Cryogenic vials 5 ml (−80°C) | Youjia YJ5 | 1.00 | 10 | 10.00 | |
| 903 protein saver snap-apart card | Whatman | 2.50 | 1 | 2.50 | |
| Oral swabs | Fenglin | 13.00 | 1 | 13.00 | |
| General label for collection container | BD Y3170707 | 0.27 | 10 | 2.70 | |
| Specimen/freezer label | BD/Y3076151 | 0.60 | 45 | 27.00 | |
| General | – | 2.50 | 1 | 2.50 | |
| 42-day | Zipper bag | Apple 3# | 0.06 | 1 | 0.06 |
| Specimen/freezer label | BD Y3076151 | 0.60 | 1 | 0.60 | |
| General label for collection container | BD Y3170707 | 0.27 | 1 | 0.27 | |
| General | – | 0.50 | 1 | 0.50 | |
| 24-month | 21 gauge needle | BD367287 | 0.20 | 1 | 0.20 |
| 6 ml Vacutainer-red top | BD367820 | 1.00 | 1 | 1.00 | |
| 200 mL urine collection cup | JND130835 | 3.50 | 1 | 3.50 | |
| Centrifuge tube(−80°C) | Corning 430791 | 1.15 | 2 | 2.30 | |
| General label for collection container | BD Y3170707 | 0.27 | 2 | 0.54 | |
| Cryogenic vials 1.2 ml (−80°C) | Nalgene 5000-1012 | 1.35 | 3 | 4.05 | |
| Specimen/freezer label | BD Y3076151 | 0.60 | 6 | 3.60 | |
| General | – | 1.00 | 1 | 1.00 | |
| Total (RMB) | 286.68 |
P1, first trimester; P2, second trimester; P3, third trimester.