Literature DB >> 32152578

Single-cell RNA-seq analysis software providers scramble to offer solutions.

Michael Eisenstein1.   

Abstract

Year:  2020        PMID： 32152578     DOI： 10.1038/s41587-020-0449-8

Source DB:  PubMed          Journal:  Nat Biotechnol        ISSN： 1087-0156            Impact factor:   54.908


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  6 in total

1.  Deep learning tackles single-cell analysis-a survey of deep learning for scRNA-seq analysis.

Authors:  Mario Flores; Zhentao Liu; Tinghe Zhang; Md Musaddaqui Hasib; Yu-Chiao Chiu; Zhenqing Ye; Karla Paniagua; Sumin Jo; Jianqiu Zhang; Shou-Jiang Gao; Yu-Fang Jin; Yidong Chen; Yufei Huang
Journal:  Brief Bioinform       Date:  2022-01-17       Impact factor: 13.994

2.  Digital Cell Sorter (DCS): a cell type identification, anomaly detection, and Hopfield landscapes toolkit for single-cell transcriptomics.

Authors:  Sergii Domanskyi; Alex Hakansson; Thomas J Bertus; Giovanni Paternostro; Carlo Piermarocchi
Journal:  PeerJ       Date:  2021-01-13       Impact factor: 2.984

3.  WASP: a versatile, web-accessible single cell RNA-Seq processing platform.

Authors:  Andreas Hoek; Katharina Maibach; Ebru Özmen; Ana Ivonne Vazquez-Armendariz; Jan Philipp Mengel; Torsten Hain; Susanne Herold; Alexander Goesmann
Journal:  BMC Genomics       Date:  2021-03-18       Impact factor: 3.969

4.  Single-cell transcriptomic profile of human pulmonary artery endothelial cells in health and pulmonary arterial hypertension.

Authors:  Kewal Asosingh; Suzy Comhair; Lori Mavrakis; Weiling Xu; Dean Horton; Ian Taylor; Svyatoslav Tkachenko; Bo Hu; Serpil Erzurum
Journal:  Sci Rep       Date:  2021-07-19       Impact factor: 4.379

5.  STACAS: Sub-Type Anchor Correction for Alignment in Seurat to integrate single-cell RNA-seq data.

Authors:  Massimo Andreatta; Santiago J Carmona
Journal:  Bioinformatics       Date:  2021-05-05       Impact factor: 6.937

6.  Benchmarking atlas-level data integration in single-cell genomics.

Authors:  Malte D Luecken; M Büttner; K Chaichoompu; A Danese; M Interlandi; M F Mueller; D C Strobl; L Zappia; M Dugas; M Colomé-Tatché; Fabian J Theis
Journal:  Nat Methods       Date:  2021-12-23       Impact factor: 28.547
  6 in total

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