Literature DB >> 32149659

Natural Language Processing for Mimicking Clinical Trial Recruitment in Critical Care: A Semi-Automated Simulation Based on the LeoPARDS Trial.

Hegler C Tissot, Anoop D Shah, David Brealey, Steve Harris, Ruth Agbakoba, Amos Folarin, Luis Romao, Lukasz Roguski, Richard Dobson, Folkert W Asselbergs.   

Abstract

Clinical trials often fail to recruit an adequate number of appropriate patients. Identifying eligible trial participants is resource-intensive when relying on manual review of clinical notes, particularly in critical care settings where the time window is short. Automated review of electronic health records (EHR) may help, but much of the information is in free text rather than a computable form. We applied natural language processing (NLP) to free text EHR data using the CogStack platform to simulate recruitment into the LeoPARDS study, a clinical trial aiming to reduce organ dysfunction in septic shock. We applied an algorithm to identify eligible patients using a moving 1-hour time window, and compared patients identified by our approach with those actually screened and recruited for the trial, for the time period that data were available. We manually reviewed records of a random sample of patients identified by the algorithm but not screened in the original trial. Our method identified 376 patients, including 34 patients with EHR data available who were actually recruited to LeoPARDS in our centre. The sensitivity of CogStack for identifying patients screened was 90% (95% CI 85%, 93%). Of the 203 patients identified by both manual screening and CogStack, the index date matched in 95 (47%) and CogStack was earlier in 94 (47%). In conclusion, analysis of EHR data using NLP could effectively replicate recruitment in a critical care trial, and identify some eligible patients at an earlier stage, potentially improving trial recruitment if implemented in real time.

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Year:  2020        PMID: 32149659     DOI: 10.1109/JBHI.2020.2977925

Source DB:  PubMed          Journal:  IEEE J Biomed Health Inform        ISSN: 2168-2194            Impact factor:   5.772


  9 in total

1.  Feasibility of Extracting Meaningful Patient Centered Outcomes From the Electronic Health Record Following Critical Illness in the Elderly.

Authors:  Sumera R Ahmad; Alex D Tarabochia; Luann Budahn; Allison M Lemahieu; Brenda Anderson; Kirtivardhan Vashistha; Lioudmila Karnatovskaia; Ognjen Gajic
Journal:  Front Med (Lausanne)       Date:  2022-06-06

Review 2.  How can natural language processing help model informed drug development?: a review.

Authors:  Roopal Bhatnagar; Sakshi Sardar; Maedeh Beheshti; Jagdeep T Podichetty
Journal:  JAMIA Open       Date:  2022-06-11

Review 3.  Applications of artificial intelligence in drug development using real-world data.

Authors:  Zhaoyi Chen; Xiong Liu; William Hogan; Elizabeth Shenkman; Jiang Bian
Journal:  Drug Discov Today       Date:  2020-12-24       Impact factor: 7.851

4.  A systematic review on natural language processing systems for eligibility prescreening in clinical research.

Authors:  Betina Idnay; Caitlin Dreisbach; Chunhua Weng; Rebecca Schnall
Journal:  J Am Med Inform Assoc       Date:  2021-12-28       Impact factor: 4.497

5.  COVID-19 Pandemic: Identifying Key Issues Using Social Media and Natural Language Processing.

Authors:  Oladapo Oyebode; Chinenye Ndulue; Dinesh Mulchandani; Banuchitra Suruliraj; Ashfaq Adib; Fidelia Anulika Orji; Evangelos Milios; Stan Matwin; Rita Orji
Journal:  J Healthc Inform Res       Date:  2022-02-11

6.  What makes administrative data "research-ready"? A systematic review and thematic analysis of published literature.

Authors:  Louise Mc Grath-Lone; Matthew A Jay; Ruth Blackburn; Emma Gordon; Ania Zylbersztejn; Linda Wiljaars; Ruth Gilbert
Journal:  Int J Popul Data Sci       Date:  2022-04-27

7.  Deployment of a Free-Text Analytics Platform at a UK National Health Service Research Hospital: CogStack at University College London Hospitals.

Authors:  Kawsar Noor; Lukasz Roguski; Xi Bai; Alex Handy; Roman Klapaukh; Amos Folarin; Luis Romao; Joshua Matteson; Nathan Lea; Leilei Zhu; Folkert W Asselbergs; Wai Keong Wong; Anoop Shah; Richard Jb Dobson
Journal:  JMIR Med Inform       Date:  2022-08-24

8.  Patient-reported outcomes via electronic health record portal versus telephone: a pragmatic randomized pilot trial of anxiety or depression symptoms in epilepsy.

Authors:  Heidi M Munger Clary; Beverly M Snively; Umit Topaloglu; Pamela Duncan; James Kimball; Halley Alexander; Gretchen A Brenes
Journal:  JAMIA Open       Date:  2022-10-12

9.  Descriptors of Sepsis Using the Sepsis-3 Criteria: A Cohort Study in Critical Care Units Within the U.K. National Institute for Health Research Critical Care Health Informatics Collaborative.

Authors:  Anoop D Shah; Niall S MacCallum; Steve Harris; David A Brealey; Edward Palmer; James Hetherington; Sinan Shi; David Perez-Suarez; Ari Ercole; Peter J Watkinson; Andrew Jones; Simon Ashworth; Richard Beale; Stephen J Brett; Mervyn Singer
Journal:  Crit Care Med       Date:  2021-11-01       Impact factor: 9.296

  9 in total

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