Literature DB >> 32149223

Two-Dimensional Hydrogen-Bonded Nanoarchitecture Composed of Rectangular 3,4,9,10-Perylenetetracarboxylic Diimide and Boomerang-Shaped Molecules Resulting from the Dissociation of 1,3,5-Tris(4-aminophenyl)benzene.

Jeremy Hieulle1, Fabien Silly1.   

Abstract

The self-assembly of 3,4,9,10-perylenetetracarboxylic diimide (PTCDI) with the star-shaped 1,3,5-tris(4-aminophenyl)benzene (TAPB) on Au(111) is investigated using scanning tunneling microscopy. PTCDI forms a compact canted arrangement on the gold surface. When TAPB is sublimated at a high temperature, the molecule dissociates into a 4-aminophenyl group and a boomerang-shaped compound. The boomerang molecule self-assembles with PTCDI to create a two-dimensional (2D) nanoarchitecture stabilized by N-H···O-C hydrogen bonds between the dissociated TAPB and PTCDI. The molecular ratio of this multicomponent structure is 1:1.
Copyright © 2020 American Chemical Society.

Entities:  

Year:  2020        PMID: 32149223      PMCID: PMC7057330          DOI: 10.1021/acsomega.9b03453

Source DB:  PubMed          Journal:  ACS Omega        ISSN: 2470-1343


Introduction

Intense research efforts have been focused on engineering novel nanomaterials and organic nanoarchitectures.[1−9] Intermolecular as well as organometallic interactions can stabilize molecular assemblies.[1,10−13] Perylene diimide derivatives are renowned compounds for their chemical and thermal stability as well as their long-lasting photostability.[14] They are thus promising molecules for engineering organic devices. The perylene diimide structure can be customized to tune its electronic properties or to modify its self-assembly.[6,14−22] Numerous functionalized perylene derivatives have thus been synthesized to create self-assembled two-dimensional (2D) hydrogen-bonded nanoarchitectures on flat surfaces.[23−28] Multicomponent organic structures have also been achieved when mixing these rectangular compounds with complementary molecules.[29−32] Other molecular shapes have also been used for engineering original nanostructures. For example, two-dimensional fractal nanoarchitectures have been fabricated by taking advantage of the self-assembly of boomerang-shaped molecules. These arrangements were stabilized by halogen bonds or metal-coordinated interactions depending on the substituents placed at each extremity of the molecules.[33−35] Boomerang-shaped molecules have also been mixed with star-shaped 1,3,5-tris(4-aminophenyl)benzene (TAPB; Figure , right) molecules to form covalently bonded Sierpiński triangles up to the second generation, taking advantage of the Schiff-base reaction.[36] Imineboroxine covalent porous hexagonal structures have also been fabricated by mixing TAPB molecules with other organic building blocks.[37] Although PTCDI and TAPB can form different arrangements on metal surfaces, it is unclear if these two molecules are complementary building blocks to create new multicomponent nanoarchitectures through self-assembly.
Figure 1

(Left) Scheme of the PTCDI molecule. (Right) Scheme of the TAPB molecule. Gray balls are carbon atoms, red balls are oxygen atoms, white balls are hydrogen atoms, and blue balls are nitrogen atoms.

(Left) Scheme of the PTCDI molecule. (Right) Scheme of the TAPB molecule. Gray balls are carbon atoms, red balls are oxygen atoms, white balls are hydrogen atoms, and blue balls are nitrogen atoms. Here, we investigate the self-assembly of 3,4,9,10-perylenetetracarboxylic diimide (PTCDI) and TAPB molecules on Au(111). Scanning tunneling microscopy (STM) in ultrahigh vacuum reveals that PTCDI self-assembles with dissociated TAPB molecules to form a two-dimensional two-component nanoarchitecture stabilized by hydrogen bonds.

Results

The scheme of the 3,4,9,10-perylenetetracarboxylic diimide (PTCDI) molecule is presented in Figure , left. This rectangular molecule is composed of a perylene center and one imide group at each side. The scheme of the 1,3,5-tris(4-aminophenyl)benzene (TAPB) molecule is presented in Figure , right. This star-shaped molecule is composed of a benzene central ring surrounded by three 4-aminophenyl groups. STM images of the PTCDI self-assembled arrangement on the Au(111) surface after the deposition of molecules at room temperature are presented in Figure a,b. STM reveals that the molecules form chains running parallel to each other. Molecules from neighboring chains are rotated in the opposite direction by the same angle of ±12° (see the molecular scheme superimposed on the STM image in Figure b). The PTCDI arrangement is stabilized by double-hydrogen bonds (N–H···O) between imide groups of adjacent molecules, as it is demonstrated by density functional theory calculations.[26] The network unit cell of this “canted” structure is a parallelogram with ∼1.7 and ∼1.5 nm unit-cell constants and an angle of ∼95° between the axes.
Figure 2

(a) Large-scale STM image of the PTCDI self-assembly on Au(111) 15 × 13 nm2 (Vs = 0.6 V; It = 200 pA). (b) High-resolution STM image of the PTCDI self-assembly, 6 × 6 nm2 (Vs = 0.6 V; It = 200 pA). As a guide for the eyes, the network unit cell (dashed white lines) and molecular schemes are superimposed onto the STM image.

(a) Large-scale STM image of the PTCDI self-assembly on Au(111) 15 × 13 nm2 (Vs = 0.6 V; It = 200 pA). (b) High-resolution STM image of the PTCDI self-assembly, 6 × 6 nm2 (Vs = 0.6 V; It = 200 pA). As a guide for the eyes, the network unit cell (dashed white lines) and molecular schemes are superimposed onto the STM image. STM images of the step edge of PTCDI domains after the deposition of TAPB molecules at room temperature are presented in Figure a–c. STM shows that intact star-shaped TAPB molecules can be locally observed. As a guide for the eyes, these molecules have been colored in blue in the images. STM also reveals that additional organic species coexist in the organic layer. These species have either a boomerang shape or an egg shape. These species have been colored in red and green in Figure a–c. It thus appears that some TAPB molecules have been dissociated during the sublimation process, as described in the scheme shown in Figure d. The egg-shaped species observed on the surface correspond to TAPB 4-aminophenyl groups (green species in Figure d), whereas the boomerang-shaped species correspond to two 4-aminophenyl groups connected to a benzene ring (red species in Figure d). The STM images do not provide evidence of whether the broken bond is homolytic or heterolytic or whether the two compounds are two radicals or one cation and one anion.
Figure 3

STM images of PTCDI domain edges after the deposition of TAPB molecules: (a) 12 × 7 nm2; (b) 5 × 5 nm2; (c) 10 × 5 nm2 (Vs = 0.6 V, It = 200 pA). (d) Scheme of the TAPB dissociation into two compounds.

STM images of PTCDI domain edges after the deposition of TAPB molecules: (a) 12 × 7 nm2; (b) 5 × 5 nm2; (c) 10 × 5 nm2 (Vs = 0.6 V, It = 200 pA). (d) Scheme of the TAPB dissociation into two compounds. A two-dimensional PTCDITAPB nanoarchitecture is locally observed on the surface. An STM image of this multicomponent structure is presented in Figure a. In this arrangement, the PTCDI molecules form parallel chains. In contrast to the PTCDI self-assembly (Figure ), the PTCDI molecules are parallel and are aligned along the main axis of the chain. Neighboring PTCDI molecules are also laterally shifted on the right and on the left on the chain axis, alternatively. The PTCDI chains are separated by paired boomerang-shaped TAPB molecules. These two molecules are arranged side-by-side and are rotated by 180° in comparison to each other. They are oriented perpendicular to the PTCDI chains. The high-resolution STM image of the network unit cell and its corresponding model (Figure b,c) reveal that the organic nanoarchitecture is stabilized by hydrogen bonds. Each 4-aminophenyl group of the TAPB molecules forms one N–H···O–C hydrogen bond with two neighboring PTCDI molecules. The network unit cell of this structure is a lozenge (dotted lines in Figure b,c) with ∼2.4 nm unit cell constant and an angle of ∼120° between the axes. The network unit cell presented in Figure b shows that the molecular ratio (PTCDI/dissociated-TAPB) composing this multicomponent nanoarchitecture is 1:1. The substantial separation between neighboring dissociated TAPB molecules shows that they did not react together.
Figure 4

High-resolution STM images of the self-assembled nanoarchitecture on Au(111): (a) 20 × 18 nm2; (b) 6 × 5 nm2 (Vs = −0.4 V, It = 400 pA). (c) Model of the PTCDI−TAPB molecular arrangement observed in (a, b).

High-resolution STM images of the self-assembled nanoarchitecture on Au(111): (a) 20 × 18 nm2; (b) 6 × 5 nm2 (Vs = −0.4 V, It = 400 pA). (c) Model of the PTCDITAPB molecular arrangement observed in (a, b). The STM image reveals that PTCDI molecules can be locally hosted in the 2D architecture cavities. The fuzzy pattern often observed in the other cavities probably results from organic species diffusing inside the cavities.

Discussion

PTCDI molecules can form various hydrogen-bonded nanoarchitectures on flat surfaces.[26] The canted arrangement is the most observed network at room temperature on Au(111). This structure is stabilized by double N–H···O bonds between imide groups of adjacent molecules and C–H···O between molecules of neighboring chains, as revealed by theoretical calculations.[26] Star-shaped molecules with a central benzene ring and three functionalized benzene arms can also self-assemble into numerous structures, either porous[38] or compact,[39] depending on the nature of the substituents. When PTCDI and star-shaped TAPB are deposited simultaneously, a 2D multicomponent nanoarchitecture is locally observed on the Au(111) surface (Figure ). The typical domain size is ∼500 nm2. STM reveals that the TAPB molecules are partially dissociated in this structure, that is, one 4-aminophenyl group is missing from the TAPB skeleton. It appears that the high temperature selected for the sublimation of the molecules from the Knudsen cell leads to the dissociation of the TAPB molecules. The boomerang TAPB molecules are expected to be highly reactive radicals. It would thus be expected that two molecules react together and form dimers (see Figure b). There is however no evidence of the formation of covalent bonds between TAPB molecules in the STM images of the PTCDITAPB network. The separation between two neighboring TAPB molecules appears first dark in the STM images, and the measured distance between nitrogen atoms of neighboring TAPB molecules is 1.4 nm in the network (Figure a). This has to be compared with the theoretical 1.1 nm separation if a dimer was formed (Figure b). This 26% increase in size rules out the formation of covalent dimers. Dissociated molecules are expected to be highly reactive,[40] but previous scanning probe microscopy (SPM) observations revealed that dehalogenated and dehydrogenated molecules can be stable on insulating thin films as well as metal surfaces.[12,41−44]Figure c shows that the proposed model with a dissociated boomerang-shaped TAPB fits the STM images. This is not the case when a TAPB covalent dimer is considered (Figure d). STM images also reveal that the four TAPB dissociated 4-aminophenyl groups can locally replace the two dissociated boomerang TAPB molecules in the PTCDITAPB cavities (Figure e). STM also shows that a misoriented boomerang TAPB and a dissociated 4-aminophenyl group can also replace a boomerang TAPB (Figure f).
Figure 5

(a) Scheme of the 1.4 nm separation between two dissociated boomerang-shaped TAPB molecules in the PTCDI–TAPB network. (b) Theoretical length of the covalent TAPB dimer (1.1 nm). (c–f) High-resolution STM images of cavities of the PTCDI–TAPB network, 3 × 3.5 nm2 (Vs = −0.4 V, It = 400 pA). As a guide for the eyes, schemes of PTCDI, TAPB dissociated 4-aminophenyl groups, and dissociated boomerang TAPB molecules have been superimposed onto the STM images in (c–f).

(a) Scheme of the 1.4 nm separation between two dissociated boomerang-shaped TAPB molecules in the PTCDITAPB network. (b) Theoretical length of the covalent TAPB dimer (1.1 nm). (c–f) High-resolution STM images of cavities of the PTCDITAPB network, 3 × 3.5 nm2 (Vs = −0.4 V, It = 400 pA). As a guide for the eyes, schemes of PTCDI, TAPB dissociated 4-aminophenyl groups, and dissociated boomerang TAPB molecules have been superimposed onto the STM images in (c–f). In Figure , STM shows that the PTCDI molecules form parallel chains, separated by boomerang-shaped dissociated-TAPB molecules. STM also reveals that this arrangement is stabilized by N–H···O bonds between PTCDI and TAPB molecules, that is, each NH2 group of TAPB forms hydrogen bonds with the oxygen atoms of two neighboring PTCDI molecules. In contrast to the PTCDI chain in the pure PTCDI arrangement (Figure ), there is no hydrogen bond between neighboring PTCDI molecules in the PTCDITAPB network.

Conclusion

In this paper, we investigated the self-assembly of PTCDI and star-shaped TAPB molecules on Au(111) surfaces. STM reveals that PTCDI self-assembles with dissociated boomerang-shaped TAPB molecules. This structure is stabilized by hydrogen bonds between PTCDI and TAPB molecules. This result opens new opportunities to create original 2D organic structures. These observations should motivate experimental investigations with low-temperature nc-AFM with a functionalized tip[41,45−47] to locally characterize the charge and the stability of dissociated molecules.

Experimental Section

Experiments were performed in an ultrahigh-vacuum (UHV) chamber at a pressure of 10–8 Pa. The Au(111) surfaces were sputtered with Ar+ ions and then annealed in UHV at 600 °C for 1 h. PTCDI molecules (Figure , left) and TAPB molecules (Figure , right) were evaporated from Knudsen cells at 250 and 280 °C, respectively, on a gold surface kept at room temperature. The molecular coverage was less than 0.2 monolayer. Cut Pt/Ir tips were used to obtain constant-current STM images at room temperature with a bias voltage applied to the sample. STM images were processed and analyzed using the homemade FabViewer application.[48]
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