| Literature DB >> 32148894 |
Felix Danker1, Christian Näther1, Wolfgang Bensch1.
Abstract
The title compound, [Mn(S4)(C8H20N4)], was accidentally obtained by the hydro-thermal reaction of Mn(ClO4)2·6H2O, cyclen (cyclen = 1,4,7,10-tetra-aza-cyclo-dodeca-ne) and Na3SbS4·9H2O in water at 413 K, indicating that polysulfide anions might represent inter-mediates in the synthesis of thio-metallate compounds using Na3SbS4·9H2O as a reactant. X-ray powder diffraction proves that the sample is slightly contaminated with NaSb(OH)6 and an unknown crystalline phase. The crystal investigated was twinned with a twofold rotation axis as the twin element, and therefore a twin refinement using data in HKLF-5 format was performed. The asymmetric unit of the title compound consists of one MnII cation, one [S4]2- anion and one cyclen ligand in general positions. The MnII cation is sixfold coordinated by two cis-S atoms of the [S4]2- anions, as well as four N atoms of the cyclen ligand within an irregular coordination. The complexes are linked via pairs of N-H⋯S hydrogen bonds into chains, which are further linked into layers by additional N-H⋯S hydrogen bonding. These layers are connected into a three-dimensional network by inter-molecular N-H⋯S and C-H⋯S hydrogen bonding. It is noted that only one similar complex with MnII is reported in the literature. © Danker et al. 2020.Entities:
Keywords: crystal structure; discrete complex; hydrogen bonding; manganese(II); polysulfide
Year: 2020 PMID: 32148894 PMCID: PMC7057377 DOI: 10.1107/S2056989020002492
Source DB: PubMed Journal: Acta Crystallogr E Crystallogr Commun
Figure 1Experimental and calculated XRPD powder patterns of the title compound. The reflections of side products are marked by stars.
Figure 2Molecular structure of the title compound with atom labelling and displacement ellipsoids drawn at the 50% probability level.
Selected geometric parameters (Å, °)
| Mn1—N1 | 2.294 (5) | Mn1—N4 | 2.329 (4) |
| Mn1—N3 | 2.313 (5) | Mn1—S4 | 2.5894 (17) |
| Mn1—N2 | 2.317 (5) | Mn1—S1 | 2.6195 (16) |
| N1—Mn1—N3 | 120.76 (17) | N2—Mn1—S4 | 145.61 (13) |
| N1—Mn1—N2 | 76.68 (16) | N4—Mn1—S4 | 83.16 (13) |
| N3—Mn1—N2 | 74.77 (16) | N1—Mn1—S1 | 86.82 (12) |
| N1—Mn1—N4 | 74.82 (15) | N3—Mn1—S1 | 137.52 (11) |
| N3—Mn1—N4 | 76.56 (16) | N2—Mn1—S1 | 82.28 (12) |
| N2—Mn1—N4 | 120.07 (17) | N4—Mn1—S1 | 145.49 (13) |
| N1—Mn1—S4 | 136.95 (12) | S4—Mn1—S1 | 91.36 (5) |
| N3—Mn1—S4 | 88.18 (13) |
Figure 3View of the Mn coordination sphere in the molecular structure of the title compound.
Figure 4View of the chains running along the b- (top) and the c-axis (bottom) directions with intermolecular N—H⋯S hydrogen bonds shown as dashed lines.
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| N1—H1⋯S4i | 1.00 | 2.50 | 3.389 (5) | 148 |
| N2—H2⋯S1ii | 1.00 | 2.63 | 3.514 (4) | 147 |
| C3—H3 | 0.99 | 2.98 | 3.744 (5) | 135 |
| N3—H3⋯S1iii | 1.00 | 2.48 | 3.394 (5) | 152 |
| N4—H4⋯S3iv | 1.00 | 2.97 | 3.534 (4) | 117 |
| N4—H4⋯S4iv | 1.00 | 2.64 | 3.570 (5) | 154 |
| C7—H7 | 0.99 | 2.98 | 3.699 (5) | 130 |
| C7—H7 | 0.99 | 2.98 | 3.756 (6) | 136 |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) .
Figure 5Crystal structure of the title compound with view of the layers along the a-axis direction with intermolecular N—H⋯S hydrogen bonds shown as dashed lines.
Figure 6Crystal structure of the title compound viewed in the direction of the layers along the c axis with intermolecular N—H⋯S and C—H⋯S hydrogen bonds shown as dashed lines.
Experimental details
| Crystal data | |
| Chemical formula | [Mn(S4)(C8H20N4)] |
|
| 355.46 |
| Crystal system, space group | Monoclinic, |
| Temperature (K) | 170 |
|
| 9.3292 (6), 12.0371 (5), 13.1750 (8) |
| β (°) | 95.885 (5) |
|
| 1471.71 (14) |
|
| 4 |
| Radiation type | Mo |
| μ (mm−1) | 1.45 |
| Crystal size (mm) | 0.15 × 0.15 × 0.05 |
| Data collection | |
| Diffractometer | Stoe IPDS2 |
| Absorption correction | Numerical ( |
|
| 0.704, 0.873 |
| No. of measured, independent and observed [ | 2959, 2959, 1919 |
| (sin θ/λ)max (Å−1) | 0.624 |
| Refinement | |
|
| 0.063, 0.173, 1.03 |
| No. of reflections | 2959 |
| No. of parameters | 155 |
| H-atom treatment | H-atom parameters constrained |
| Δρmax, Δρmin (e Å−3) | 0.57, −0.70 |
Computer programs: X-AREA (Stoe & Cie, 2008 ▸), SHELXS97 (Sheldrick, 2008 ▸), SHELXL2018/3 (Sheldrick, 2015 ▸), DIAMOND (Brandenburg, 1999 ▸) and publCIF (Westrip, 2010 ▸).
| [Mn(S4)(C8H20N4)] | |
| Monoclinic, | Mo |
| Cell parameters from 9562 reflections | |
| θ = 2.2–26.3° | |
| µ = 1.45 mm−1 | |
| β = 95.885 (5)° | |
| Plate, yellow | |
| 0.15 × 0.15 × 0.05 mm |
| STOE IPDS-2 diffractometer | 1919 reflections with |
| ω scans | θmax = 26.3°, θmin = 2.2° |
| Absorption correction: numerical (X-Red32 and X-Shape; Stoe & Cie, 2008) | |
| 2959 measured reflections | |
| 2959 independent reflections |
| Refinement on | 0 restraints |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H-atom parameters constrained | |
| (Δ/σ)max < 0.001 | |
| 2959 reflections | Δρmax = 0.57 e Å−3 |
| 155 parameters | Δρmin = −0.70 e Å−3 |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Refinement. Refined as a two-component twin |
| Mn1 | 0.59848 (9) | 0.49918 (7) | 0.25694 (6) | 0.0422 (3) | |
| N1 | 0.7171 (5) | 0.6664 (4) | 0.2664 (3) | 0.0457 (11) | |
| H1 | 0.645621 | 0.725211 | 0.279659 | 0.055* | |
| C1 | 0.8299 (6) | 0.6651 (5) | 0.3543 (4) | 0.0469 (13) | |
| H1A | 0.861723 | 0.741829 | 0.371547 | 0.056* | |
| H1B | 0.914309 | 0.621997 | 0.336767 | 0.056* | |
| C2 | 0.7676 (6) | 0.6122 (5) | 0.4446 (4) | 0.0468 (13) | |
| H2A | 0.842206 | 0.610102 | 0.503699 | 0.056* | |
| H2B | 0.686271 | 0.657868 | 0.463784 | 0.056* | |
| N2 | 0.7167 (5) | 0.4989 (4) | 0.4204 (3) | 0.0477 (11) | |
| H2 | 0.644962 | 0.478937 | 0.468826 | 0.057* | |
| C3 | 0.8319 (6) | 0.4142 (5) | 0.4303 (4) | 0.0496 (14) | |
| H3A | 0.861502 | 0.399186 | 0.503323 | 0.060* | |
| H3B | 0.917018 | 0.441783 | 0.398780 | 0.060* | |
| C4 | 0.7769 (7) | 0.3086 (5) | 0.3777 (4) | 0.0525 (14) | |
| H4A | 0.855111 | 0.252813 | 0.380371 | 0.063* | |
| H4B | 0.697143 | 0.277493 | 0.413007 | 0.063* | |
| N3 | 0.7251 (5) | 0.3338 (4) | 0.2703 (3) | 0.0452 (11) | |
| H3 | 0.657863 | 0.273002 | 0.244550 | 0.054* | |
| C5 | 0.8434 (6) | 0.3386 (5) | 0.2033 (4) | 0.0468 (13) | |
| H5A | 0.880323 | 0.262817 | 0.192812 | 0.056* | |
| H5B | 0.923624 | 0.384099 | 0.236072 | 0.056* | |
| C6 | 0.7886 (7) | 0.3891 (5) | 0.1014 (4) | 0.0495 (14) | |
| H6A | 0.868193 | 0.393285 | 0.057310 | 0.059* | |
| H6B | 0.711996 | 0.341272 | 0.067012 | 0.059* | |
| N4 | 0.7302 (5) | 0.5024 (4) | 0.1160 (3) | 0.0458 (11) | |
| H4 | 0.661531 | 0.519747 | 0.054772 | 0.055* | |
| C7 | 0.8394 (6) | 0.5908 (5) | 0.1258 (4) | 0.0477 (14) | |
| H7A | 0.871251 | 0.607700 | 0.058040 | 0.057* | |
| H7B | 0.924346 | 0.566065 | 0.171399 | 0.057* | |
| C8 | 0.7750 (7) | 0.6935 (5) | 0.1692 (4) | 0.0505 (14) | |
| H8A | 0.849852 | 0.751719 | 0.180854 | 0.061* | |
| H8B | 0.696785 | 0.722648 | 0.119904 | 0.061* | |
| S1 | 0.39710 (16) | 0.59715 (13) | 0.34907 (10) | 0.0482 (4) | |
| S2 | 0.21580 (17) | 0.50670 (14) | 0.30042 (11) | 0.0524 (4) | |
| S3 | 0.22169 (17) | 0.48858 (14) | 0.14646 (10) | 0.0523 (4) | |
| S4 | 0.40779 (16) | 0.40112 (13) | 0.13102 (10) | 0.0478 (4) |
| Mn1 | 0.0532 (5) | 0.0398 (5) | 0.0347 (4) | 0.0000 (4) | 0.0106 (3) | 0.0007 (3) |
| N1 | 0.053 (3) | 0.047 (3) | 0.039 (2) | 0.000 (2) | 0.0138 (19) | −0.0016 (19) |
| C1 | 0.055 (3) | 0.044 (3) | 0.043 (3) | −0.005 (3) | 0.009 (2) | −0.003 (2) |
| C2 | 0.060 (3) | 0.048 (3) | 0.034 (2) | −0.001 (3) | 0.011 (2) | −0.004 (2) |
| N2 | 0.059 (3) | 0.045 (3) | 0.041 (2) | 0.001 (2) | 0.016 (2) | 0.002 (2) |
| C3 | 0.060 (4) | 0.055 (4) | 0.034 (2) | 0.005 (3) | 0.005 (2) | 0.004 (2) |
| C4 | 0.073 (4) | 0.042 (3) | 0.044 (3) | 0.009 (3) | 0.012 (3) | 0.008 (3) |
| N3 | 0.055 (3) | 0.039 (3) | 0.043 (2) | −0.002 (2) | 0.010 (2) | −0.0001 (19) |
| C5 | 0.056 (3) | 0.047 (3) | 0.039 (3) | 0.008 (3) | 0.010 (2) | 0.000 (2) |
| C6 | 0.063 (4) | 0.047 (3) | 0.041 (3) | 0.005 (3) | 0.016 (2) | −0.001 (2) |
| N4 | 0.056 (3) | 0.043 (3) | 0.040 (2) | −0.006 (2) | 0.015 (2) | −0.0024 (19) |
| C7 | 0.064 (4) | 0.044 (3) | 0.038 (2) | −0.003 (3) | 0.019 (2) | −0.001 (2) |
| C8 | 0.066 (4) | 0.047 (3) | 0.040 (3) | −0.002 (3) | 0.011 (3) | 0.009 (3) |
| S1 | 0.0562 (9) | 0.0480 (9) | 0.0418 (7) | 0.0009 (7) | 0.0114 (6) | −0.0023 (6) |
| S2 | 0.0593 (9) | 0.0558 (10) | 0.0443 (7) | −0.0032 (8) | 0.0167 (6) | −0.0025 (6) |
| S3 | 0.0606 (9) | 0.0551 (10) | 0.0414 (7) | 0.0035 (8) | 0.0061 (6) | −0.0003 (6) |
| S4 | 0.0567 (9) | 0.0473 (9) | 0.0408 (7) | −0.0015 (7) | 0.0118 (6) | −0.0022 (6) |
| Mn1—N1 | 2.294 (5) | C4—H4A | 0.9900 |
| Mn1—N3 | 2.313 (5) | C4—H4B | 0.9900 |
| Mn1—N2 | 2.317 (5) | N3—C5 | 1.483 (6) |
| Mn1—N4 | 2.329 (4) | N3—H3 | 1.0000 |
| Mn1—S4 | 2.5894 (17) | C5—C6 | 1.513 (8) |
| Mn1—S1 | 2.6195 (16) | C5—H5A | 0.9900 |
| N1—C8 | 1.477 (6) | C5—H5B | 0.9900 |
| N1—C1 | 1.482 (7) | C6—N4 | 1.488 (7) |
| N1—H1 | 1.0000 | C6—H6A | 0.9900 |
| C1—C2 | 1.517 (7) | C6—H6B | 0.9900 |
| C1—H1A | 0.9900 | N4—C7 | 1.470 (7) |
| C1—H1B | 0.9900 | N4—H4 | 1.0000 |
| C2—N2 | 1.468 (7) | C7—C8 | 1.513 (8) |
| C2—H2A | 0.9900 | C7—H7A | 0.9900 |
| C2—H2B | 0.9900 | C7—H7B | 0.9900 |
| N2—C3 | 1.477 (7) | C8—H8A | 0.9900 |
| N2—H2 | 1.0000 | C8—H8B | 0.9900 |
| C3—C4 | 1.512 (8) | S1—S2 | 2.058 (2) |
| C3—H3A | 0.9900 | S2—S3 | 2.0465 (19) |
| C3—H3B | 0.9900 | S3—S4 | 2.058 (2) |
| C4—N3 | 1.480 (7) | ||
| N1—Mn1—N3 | 120.76 (17) | N3—C4—H4A | 109.8 |
| N1—Mn1—N2 | 76.68 (16) | C3—C4—H4A | 109.8 |
| N3—Mn1—N2 | 74.77 (16) | N3—C4—H4B | 109.8 |
| N1—Mn1—N4 | 74.82 (15) | C3—C4—H4B | 109.8 |
| N3—Mn1—N4 | 76.56 (16) | H4A—C4—H4B | 108.3 |
| N2—Mn1—N4 | 120.07 (17) | C4—N3—C5 | 112.8 (5) |
| N1—Mn1—S4 | 136.95 (12) | C4—N3—Mn1 | 111.3 (3) |
| N3—Mn1—S4 | 88.18 (13) | C5—N3—Mn1 | 109.0 (3) |
| N2—Mn1—S4 | 145.61 (13) | C4—N3—H3 | 107.8 |
| N4—Mn1—S4 | 83.16 (13) | C5—N3—H3 | 107.8 |
| N1—Mn1—S1 | 86.82 (12) | Mn1—N3—H3 | 107.8 |
| N3—Mn1—S1 | 137.52 (11) | N3—C5—C6 | 109.8 (5) |
| N2—Mn1—S1 | 82.28 (12) | N3—C5—H5A | 109.7 |
| N4—Mn1—S1 | 145.49 (13) | C6—C5—H5A | 109.7 |
| S4—Mn1—S1 | 91.36 (5) | N3—C5—H5B | 109.7 |
| C8—N1—C1 | 112.7 (4) | C6—C5—H5B | 109.7 |
| C8—N1—Mn1 | 111.3 (3) | H5A—C5—H5B | 108.2 |
| C1—N1—Mn1 | 109.4 (3) | N4—C6—C5 | 110.3 (4) |
| C8—N1—H1 | 107.7 | N4—C6—H6A | 109.6 |
| C1—N1—H1 | 107.7 | C5—C6—H6A | 109.6 |
| Mn1—N1—H1 | 107.7 | N4—C6—H6B | 109.6 |
| N1—C1—C2 | 108.6 (4) | C5—C6—H6B | 109.6 |
| N1—C1—H1A | 110.0 | H6A—C6—H6B | 108.1 |
| C2—C1—H1A | 110.0 | C7—N4—C6 | 114.5 (4) |
| N1—C1—H1B | 110.0 | C7—N4—Mn1 | 111.1 (3) |
| C2—C1—H1B | 110.0 | C6—N4—Mn1 | 108.5 (3) |
| H1A—C1—H1B | 108.4 | C7—N4—H4 | 107.4 |
| N2—C2—C1 | 111.1 (4) | C6—N4—H4 | 107.4 |
| N2—C2—H2A | 109.4 | Mn1—N4—H4 | 107.4 |
| C1—C2—H2A | 109.4 | N4—C7—C8 | 109.0 (4) |
| N2—C2—H2B | 109.4 | N4—C7—H7A | 109.9 |
| C1—C2—H2B | 109.4 | C8—C7—H7A | 109.9 |
| H2A—C2—H2B | 108.0 | N4—C7—H7B | 109.9 |
| C2—N2—C3 | 114.0 (5) | C8—C7—H7B | 109.9 |
| C2—N2—Mn1 | 108.2 (3) | H7A—C7—H7B | 108.3 |
| C3—N2—Mn1 | 110.8 (3) | N1—C8—C7 | 110.0 (5) |
| C2—N2—H2 | 107.9 | N1—C8—H8A | 109.7 |
| C3—N2—H2 | 107.9 | C7—C8—H8A | 109.7 |
| Mn1—N2—H2 | 107.9 | N1—C8—H8B | 109.7 |
| N2—C3—C4 | 109.2 (5) | C7—C8—H8B | 109.7 |
| N2—C3—H3A | 109.8 | H8A—C8—H8B | 108.2 |
| C4—C3—H3A | 109.8 | S2—S1—Mn1 | 102.89 (7) |
| N2—C3—H3B | 109.8 | S3—S2—S1 | 105.09 (9) |
| C4—C3—H3B | 109.8 | S2—S3—S4 | 105.14 (9) |
| H3A—C3—H3B | 108.3 | S3—S4—Mn1 | 103.57 (7) |
| N3—C4—C3 | 109.2 (4) |
| H··· | ||||
| N1—H1···S4i | 1.00 | 2.50 | 3.389 (5) | 148 |
| N2—H2···S1ii | 1.00 | 2.63 | 3.514 (4) | 147 |
| C3—H3 | 0.99 | 2.98 | 3.744 (5) | 135 |
| N3—H3···S1iii | 1.00 | 2.48 | 3.394 (5) | 152 |
| N4—H4···S3iv | 1.00 | 2.97 | 3.534 (4) | 117 |
| N4—H4···S4iv | 1.00 | 2.64 | 3.570 (5) | 154 |
| C7—H7 | 0.99 | 2.98 | 3.699 (5) | 130 |
| C7—H7 | 0.99 | 2.98 | 3.756 (6) | 136 |