| Literature DB >> 32148888 |
Gulnara Sh Duruskari1, Mehmet Akkurt2, Gunay Z Mammadova1, Taras Chyrka3, Abel M Maharramov1.
Abstract
The central thia-zolidine ring of the titleEntities:
Keywords: Hirshfeld surface analysis; charge assisted hydrogen bonding; crystal structure; envelope conformation; thiazolidine ring
Year: 2020 PMID: 32148888 PMCID: PMC7057372 DOI: 10.1107/S2056989020001899
Source DB: PubMed Journal: Acta Crystallogr E Crystallogr Commun
Figure 1The molecular structure of the title salt, with the atom labelling. Displacement ellipsoids are drawn at the 30% probability level. The interionic hydrogen bond is shown as a dashed line.
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| N3—H3 | 0.90 | 2.37 | 3.258 (3) | 168 |
| N3—H3 | 0.90 | 2.55 | 3.399 (3) | 158 |
Symmetry code: (i) .
Figure 2A view of the crystal packing showing the formation of chains parallel to the b axis through N—H⋯Br hydrogen bonds (dashed lines).
Figure 3View of the three-dimensional Hirshfeld surface of the title salt plotted over d norm.
Summary of short interatomic contacts (Å) in the title salt
| Contact | Distance | Symmetry operation |
|---|---|---|
| Br1⋯H3 | 2.37 |
|
| Br1⋯H3 | 2.55 | 1 − |
| Br1⋯H14 | 3.14 | − |
| Br1⋯H4 | 2.96 |
|
| Br1⋯H12 | 3.02 |
|
Figure 4Hirshfeld surface of the title salt plotted over shape-index.
Figure 5The Hirshfeld surface representations and the full two-dimensional fingerprint plots for the title salt, showing (a) all interactions, and delineated into (b) H⋯H, (c) C⋯H/H⋯C, (d) H⋯Br/Br⋯H, (e) H⋯S/S⋯H and (f) C⋯N/N⋯C interactions. The d i and d e values are the closest internal and external distances (in Å) from given points on the Hirshfeld surface.
Percentage contributions of interatomic contacts to the Hirshfeld surface for the title salt
| Contact | Percentage contribution |
|---|---|
| H⋯H | 46.4 |
| C⋯H/H⋯C | 18.6 |
| H⋯Br/Br⋯H | 17.5 |
| H⋯S/S⋯H | 4.5 |
| C⋯N/N⋯C | 3.7 |
| C⋯S/S⋯C | 3.0 |
| H⋯N/N⋯H | 2.6 |
| C⋯C | 2.3 |
| C⋯Br/Br⋯C | 0.9 |
| N⋯S/S⋯N | 0.5 |
| N⋯N | 0.2 |
Experimental details
| Crystal data | |
| Chemical formula | C16H16N3S+·Br− |
|
| 362.29 |
| Crystal system, space group | Monoclinic, |
| Temperature (K) | 296 |
|
| 12.138 (8), 8.336 (5), 15.872 (9) |
| β (°) | 93.910 (16) |
|
| 1602.3 (17) |
|
| 4 |
| Radiation type | Mo |
| μ (mm−1) | 2.69 |
| Crystal size (mm) | 0.21 × 0.18 × 0.13 |
| Data collection | |
| Diffractometer | Bruker APEXII CCD |
| Absorption correction | Multi-scan ( |
|
| 0.582, 0.713 |
| No. of measured, independent and observed [ | 23979, 3314, 2742 |
|
| 0.049 |
| (sin θ/λ)max (Å−1) | 0.629 |
| Refinement | |
|
| 0.040, 0.111, 1.06 |
| No. of reflections | 3314 |
| No. of parameters | 190 |
| No. of restraints | 12 |
| H-atom treatment | H-atom parameters constrained |
| Δρmax, Δρmin (e Å−3) | 0.74, −0.60 |
Computer programs: APEX2 and SAINT (Bruker, 2003 ▸), SHELXT2014 (Sheldrick, 2015a ▸), SHELXL2016 (Sheldrick, 2015b ▸) and SHELXTL (Sheldrick, 2008 ▸).
| C16H16N3S+·Br− | |
| Monoclinic, | Mo |
| Cell parameters from 9891 reflections | |
| θ = 2.8–26.4° | |
| µ = 2.69 mm−1 | |
| β = 93.910 (16)° | |
| Plate, colourless | |
| 0.21 × 0.18 × 0.13 mm |
| Bruker APEXII CCD diffractometer | 2742 reflections with |
| φ and ω scans | |
| Absorption correction: multi-scan (SADABS; Bruker, 2003) | θmax = 26.5°, θmin = 2.6° |
| 23979 measured reflections | |
| 3314 independent reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: mixed | |
| H-atom parameters constrained | |
| 3314 reflections | (Δ/σ)max < 0.001 |
| 190 parameters | Δρmax = 0.74 e Å−3 |
| 12 restraints | Δρmin = −0.60 e Å−3 |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Br1 | 0.36371 (3) | 0.40930 (5) | 0.77766 (2) | 0.05996 (15) | |
| S1 | 0.27771 (6) | 0.50993 (10) | 0.55109 (5) | 0.0478 (2) | |
| N1 | 0.52247 (19) | 0.7685 (3) | 0.49030 (15) | 0.0411 (5) | |
| N2 | 0.42403 (19) | 0.6853 (3) | 0.48814 (15) | 0.0438 (5) | |
| N3 | 0.4551 (2) | 0.6390 (3) | 0.63168 (16) | 0.0500 (6) | |
| H3A | 0.431514 | 0.589059 | 0.677388 | 0.060* | |
| H3B | 0.509254 | 0.711959 | 0.640888 | 0.060* | |
| C1 | 0.3432 (2) | 0.6653 (4) | 0.41558 (19) | 0.0467 (7) | |
| H1A | 0.380449 | 0.651339 | 0.363896 | 0.056* | |
| H1B | 0.295261 | 0.758163 | 0.409430 | 0.056* | |
| C2 | 0.2763 (3) | 0.5140 (4) | 0.4348 (2) | 0.0489 (7) | |
| H2A | 0.315568 | 0.419380 | 0.415778 | 0.059* | |
| C3 | 0.3971 (2) | 0.6205 (3) | 0.56063 (18) | 0.0412 (6) | |
| C4 | 0.5460 (2) | 0.8450 (4) | 0.42487 (19) | 0.0440 (6) | |
| H4A | 0.495374 | 0.850348 | 0.378264 | 0.053* | |
| C5 | 0.6520 (2) | 0.9241 (3) | 0.42299 (14) | 0.0416 (6) | |
| C6 | 0.7284 (2) | 0.9221 (4) | 0.49283 (19) | 0.0513 (7) | |
| H6A | 0.710541 | 0.874346 | 0.543049 | 0.062* | |
| C7 | 0.8319 (2) | 0.9924 (4) | 0.4867 (2) | 0.0663 (10) | |
| H7A | 0.883751 | 0.988871 | 0.532539 | 0.080* | |
| C8 | 0.8581 (3) | 1.0679 (4) | 0.41226 (19) | 0.0652 (10) | |
| H8A | 0.927072 | 1.114885 | 0.408687 | 0.078* | |
| C9 | 0.7808 (2) | 1.0730 (4) | 0.3432 (2) | 0.0651 (10) | |
| H9A | 0.797532 | 1.124866 | 0.293831 | 0.078* | |
| C10 | 0.6782 (2) | 0.9998 (4) | 0.34862 (17) | 0.0551 (8) | |
| H10A | 0.626928 | 1.001586 | 0.302329 | 0.066* | |
| C11 | 0.1609 (2) | 0.5115 (3) | 0.39571 (17) | 0.0446 (6) | |
| C12 | 0.1299 (2) | 0.3891 (4) | 0.3387 (2) | 0.0613 (9) | |
| H12A | 0.180793 | 0.310914 | 0.325946 | 0.074* | |
| C13 | 0.0225 (2) | 0.3838 (5) | 0.3009 (2) | 0.0690 (10) | |
| H13A | 0.002162 | 0.302592 | 0.262799 | 0.083* | |
| C14 | −0.0538 (3) | 0.5001 (4) | 0.3205 (2) | 0.0661 (10) | |
| H14A | −0.124515 | 0.498545 | 0.293897 | 0.079* | |
| C15 | −0.0251 (3) | 0.6186 (4) | 0.3794 (2) | 0.0683 (10) | |
| H15A | −0.076995 | 0.693888 | 0.394077 | 0.082* | |
| C16 | 0.0820 (2) | 0.6235 (4) | 0.4163 (2) | 0.0631 (9) | |
| H16A | 0.101386 | 0.703134 | 0.455623 | 0.076* |
| Br1 | 0.0594 (2) | 0.0700 (3) | 0.0489 (2) | −0.01088 (16) | −0.00776 (15) | 0.01409 (15) |
| S1 | 0.0461 (4) | 0.0511 (4) | 0.0467 (4) | −0.0073 (3) | 0.0065 (3) | 0.0068 (3) |
| N1 | 0.0379 (12) | 0.0421 (13) | 0.0432 (13) | −0.0028 (10) | 0.0028 (10) | 0.0008 (10) |
| N2 | 0.0387 (12) | 0.0496 (14) | 0.0429 (13) | −0.0054 (10) | 0.0013 (10) | 0.0085 (11) |
| N3 | 0.0544 (15) | 0.0552 (15) | 0.0405 (13) | −0.0076 (12) | 0.0042 (11) | 0.0037 (11) |
| C1 | 0.0426 (15) | 0.0550 (17) | 0.0418 (15) | −0.0053 (13) | −0.0020 (12) | 0.0096 (13) |
| C2 | 0.0471 (16) | 0.0482 (17) | 0.0515 (17) | −0.0002 (13) | 0.0038 (13) | −0.0012 (14) |
| C3 | 0.0406 (14) | 0.0414 (14) | 0.0419 (15) | 0.0029 (11) | 0.0062 (12) | 0.0012 (12) |
| C4 | 0.0436 (15) | 0.0431 (15) | 0.0449 (15) | −0.0018 (12) | 0.0005 (12) | 0.0055 (12) |
| C5 | 0.0422 (15) | 0.0334 (14) | 0.0497 (16) | −0.0004 (11) | 0.0063 (12) | −0.0022 (12) |
| C6 | 0.0536 (18) | 0.0424 (16) | 0.0566 (18) | −0.0077 (13) | −0.0055 (15) | 0.0040 (14) |
| C7 | 0.053 (2) | 0.055 (2) | 0.087 (3) | −0.0103 (16) | −0.0162 (18) | −0.0012 (19) |
| C8 | 0.0486 (19) | 0.059 (2) | 0.089 (3) | −0.0127 (16) | 0.0169 (19) | −0.0111 (19) |
| C9 | 0.070 (2) | 0.068 (2) | 0.059 (2) | −0.0205 (19) | 0.0244 (18) | −0.0054 (17) |
| C10 | 0.059 (2) | 0.060 (2) | 0.0468 (17) | −0.0132 (16) | 0.0068 (15) | −0.0005 (15) |
| C11 | 0.0407 (15) | 0.0474 (16) | 0.0457 (15) | −0.0051 (12) | 0.0039 (12) | 0.0059 (13) |
| C12 | 0.061 (2) | 0.059 (2) | 0.065 (2) | 0.0023 (16) | 0.0165 (17) | −0.0059 (17) |
| C13 | 0.063 (2) | 0.082 (3) | 0.061 (2) | −0.022 (2) | 0.0058 (18) | −0.0193 (19) |
| C14 | 0.054 (2) | 0.083 (3) | 0.061 (2) | −0.0111 (19) | 0.0019 (17) | 0.010 (2) |
| C15 | 0.055 (2) | 0.062 (2) | 0.088 (3) | 0.0063 (17) | 0.0043 (19) | 0.007 (2) |
| C16 | 0.060 (2) | 0.0477 (18) | 0.083 (3) | −0.0009 (15) | 0.0096 (18) | −0.0116 (17) |
| S1—C3 | 1.716 (3) | C6—H6A | 0.9300 |
| S1—C2 | 1.844 (3) | C7—C8 | 1.394 (2) |
| N1—C4 | 1.268 (4) | C7—H7A | 0.9300 |
| N1—N2 | 1.380 (3) | C8—C9 | 1.394 (2) |
| N2—C3 | 1.332 (4) | C8—H8A | 0.9300 |
| N2—C1 | 1.470 (4) | C9—C10 | 1.394 (2) |
| N3—C3 | 1.297 (4) | C9—H9A | 0.9300 |
| N3—H3A | 0.9000 | C10—H10A | 0.9300 |
| N3—H3B | 0.9001 | C11—C16 | 1.392 (2) |
| C1—C2 | 1.542 (4) | C11—C12 | 1.398 (2) |
| C1—H1A | 0.9700 | C12—C13 | 1.397 (2) |
| C1—H1B | 0.9700 | C12—H12A | 0.9300 |
| C2—C11 | 1.493 (4) | C13—C14 | 1.391 (2) |
| C2—H2A | 0.9800 | C13—H13A | 0.9300 |
| C4—C5 | 1.447 (4) | C14—C15 | 1.389 (2) |
| C4—H4A | 0.9300 | C14—H14A | 0.9300 |
| C5—C10 | 1.3944 (19) | C15—C16 | 1.390 (2) |
| C5—C6 | 1.396 (2) | C15—H15A | 0.9300 |
| C6—C7 | 1.395 (2) | C16—H16A | 0.9300 |
| C3—S1—C2 | 91.65 (14) | C5—C6—H6A | 120.3 |
| C4—N1—N2 | 118.4 (2) | C8—C7—C6 | 120.5 (3) |
| C3—N2—N1 | 116.4 (2) | C8—C7—H7A | 119.8 |
| C3—N2—C1 | 116.2 (2) | C6—C7—H7A | 119.8 |
| N1—N2—C1 | 127.4 (2) | C9—C8—C7 | 120.0 (3) |
| C3—N3—H3A | 117.5 | C9—C8—H8A | 120.0 |
| C3—N3—H3B | 124.6 | C7—C8—H8A | 120.0 |
| H3A—N3—H3B | 116.8 | C8—C9—C10 | 119.6 (3) |
| N2—C1—C2 | 105.7 (2) | C8—C9—H9A | 120.2 |
| N2—C1—H1A | 110.6 | C10—C9—H9A | 120.2 |
| C2—C1—H1A | 110.6 | C9—C10—C5 | 120.4 (3) |
| N2—C1—H1B | 110.6 | C9—C10—H10A | 119.8 |
| C2—C1—H1B | 110.6 | C5—C10—H10A | 119.8 |
| H1A—C1—H1B | 108.7 | C16—C11—C12 | 118.8 (3) |
| C11—C2—C1 | 114.9 (3) | C16—C11—C2 | 122.2 (2) |
| C11—C2—S1 | 111.1 (2) | C12—C11—C2 | 118.9 (2) |
| C1—C2—S1 | 104.1 (2) | C13—C12—C11 | 120.2 (3) |
| C11—C2—H2A | 108.8 | C13—C12—H12A | 119.9 |
| C1—C2—H2A | 108.8 | C11—C12—H12A | 119.9 |
| S1—C2—H2A | 108.8 | C14—C13—C12 | 119.9 (3) |
| N3—C3—N2 | 123.5 (3) | C14—C13—H13A | 120.1 |
| N3—C3—S1 | 123.1 (2) | C12—C13—H13A | 120.1 |
| N2—C3—S1 | 113.4 (2) | C15—C14—C13 | 120.4 (3) |
| N1—C4—C5 | 119.7 (3) | C15—C14—H14A | 119.8 |
| N1—C4—H4A | 120.1 | C13—C14—H14A | 119.8 |
| C5—C4—H4A | 120.1 | C14—C15—C16 | 119.3 (3) |
| C10—C5—C6 | 120.0 (3) | C14—C15—H15A | 120.3 |
| C10—C5—C4 | 118.6 (2) | C16—C15—H15A | 120.3 |
| C6—C5—C4 | 121.4 (2) | C15—C16—C11 | 121.3 (3) |
| C7—C6—C5 | 119.5 (3) | C15—C16—H16A | 119.3 |
| C7—C6—H6A | 120.3 | C11—C16—H16A | 119.3 |
| C4—N1—N2—C3 | −173.3 (3) | C5—C6—C7—C8 | 1.7 (5) |
| C4—N1—N2—C1 | 4.2 (4) | C6—C7—C8—C9 | −0.3 (6) |
| C3—N2—C1—C2 | −24.6 (4) | C7—C8—C9—C10 | −1.1 (6) |
| N1—N2—C1—C2 | 157.9 (3) | C8—C9—C10—C5 | 1.0 (6) |
| N2—C1—C2—C11 | 151.9 (3) | C6—C5—C10—C9 | 0.4 (5) |
| N2—C1—C2—S1 | 30.1 (3) | C4—C5—C10—C9 | −177.9 (3) |
| C3—S1—C2—C11 | −148.7 (2) | C1—C2—C11—C16 | −63.2 (4) |
| C3—S1—C2—C1 | −24.5 (2) | S1—C2—C11—C16 | 54.7 (4) |
| N1—N2—C3—N3 | 3.6 (4) | C1—C2—C11—C12 | 119.2 (3) |
| C1—N2—C3—N3 | −174.1 (3) | S1—C2—C11—C12 | −122.9 (3) |
| N1—N2—C3—S1 | −176.5 (2) | C16—C11—C12—C13 | 2.5 (5) |
| C1—N2—C3—S1 | 5.8 (3) | C2—C11—C12—C13 | −179.9 (3) |
| C2—S1—C3—N3 | −168.0 (3) | C11—C12—C13—C14 | −0.4 (6) |
| C2—S1—C3—N2 | 12.1 (2) | C12—C13—C14—C15 | −2.1 (6) |
| N2—N1—C4—C5 | −175.7 (3) | C13—C14—C15—C16 | 2.5 (6) |
| N1—C4—C5—C10 | 176.5 (3) | C14—C15—C16—C11 | −0.3 (6) |
| N1—C4—C5—C6 | −1.9 (5) | C12—C11—C16—C15 | −2.1 (6) |
| C10—C5—C6—C7 | −1.8 (5) | C2—C11—C16—C15 | −179.7 (3) |
| C4—C5—C6—C7 | 176.5 (3) |
| H··· | ||||
| N3—H3 | 0.90 | 2.37 | 3.258 (3) | 168 |
| N3—H3 | 0.90 | 2.55 | 3.399 (3) | 158 |