| Literature DB >> 32148864 |
Felix Langenohl1, Felix Otte1, Carsten Strohmann1.
Abstract
The crystal structure of the title compound, C10H13N·3H2O, a heterocyclic amine, was determined in the presence of <span class="Chemical">water. The compound co-crystallizes with three water mol-ecules in the asymmetric unit, which leads to the formation of hydrogen bonding in the crystal. © Langenohl et al. 2020.Entities:
Keywords: 2-methyl-1,2,3,4-tetrahydroisoquinoline; TIQ; crystal structure; crystal water; heterocyclic amine; hydrogen bonding; secondary amine
Year: 2020 PMID: 32148864 PMCID: PMC7057357 DOI: 10.1107/S2056989020000730
Source DB: PubMed Journal: Acta Crystallogr E Crystallogr Commun
Figure 1Asymmetric unit and molecular structure in the crystal of the title compound with the unit-cell boundaries and atom labelling. Displacement ellipsoids are drawn at the 50% probability level.
Selected geometric parameters (Å, °)
| N1—C1 | 1.4678 (14) | N1—C6 | 1.4671 (13) |
| N1—C2 | 1.4708 (14) | C4—C5 | 1.3977 (13) |
| C1—N1—C2 | 110.91 (9) | N1—C2—C3 | 109.72 (9) |
| C6—N1—C1 | 109.43 (8) | N1—C6—C5 | 112.77 (8) |
| C6—N1—C2 | 110.12 (8) | C4—C3—C2 | 112.45 (9) |
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| O1—H1 | 0.94 (2) | 1.81 (2) | 2.7394 (12) | 170.7 (18) |
| O1—H1 | 0.95 (2) | 1.81 (2) | 2.7635 (12) | 176 (2) |
| O3—H3 | 0.86 (2) | 1.96 (2) | 2.8070 (13) | 165.8 (19) |
| O3—H3 | 0.91 (2) | 1.84 (2) | 2.7461 (12) | 175.1 (19) |
| O2—H2 | 0.92 (2) | 1.84 (2) | 2.7538 (12) | 174.9 (19) |
| O2—H2 | 0.88 (2) | 1.88 (2) | 2.7512 (13) | 173 (2) |
| C6—H6 | 0.98 (2) | 2.49 (2) | 3.4531 (3) | 168.8 (2) |
Symmetry codes: (i) ; (ii) ; (iii) .
Figure 2View along the b axis through the crystal packing shows the hydrogen-bonding network, the parallel stacked organic molecules and reveals the alternating hydrophobic and hydrophilic packing phases.
Figure 3View along the c axis through the crystal packing showing the other side of the hydrogen-bonding network and the different arrangement of the organic molecules.
Figure 4View along the a axis through the crystal packing shows the hydrogen-bonding network. For a better view, only one amine molecule is shown, to highlight the supramolecular water network in the bc plane. The various hydrogen bonds are labelled as examples for a four-, five- and sex-membered ring (red b–f), as well as an amine hydrogen bond (green a).
Figure 5Hirshfeld-surface analysis (CrystalExplorer17; Turner et al., 2017 ▸) of the compound displays close contacts in the crystal. The weak hydrogen bond between oxygen atom O3 and the H6A hydrogen atom is labelled. Symmetry codes: (i) 1 – x, + y, 3/2 – z; (ii) 1 – x, 1 – y, 2 – z.
Experimental details
| Crystal data | |
| Chemical formula | C10H13N·3H2O |
|
| 201.26 |
| Crystal system, space group | Monoclinic, |
| Temperature (K) | 100 |
|
| 16.1791 (19), 5.9209 (6), 12.5007 (14) |
| β (°) | 106.093 (5) |
|
| 1150.6 (2) |
|
| 4 |
| Radiation type | Mo |
| μ (mm−1) | 0.09 |
| Crystal size (mm) | 0.51 × 0.09 × 0.05 |
| Data collection | |
| Diffractometer | Bruker D8 Venture |
| Absorption correction | Multi-scan ( |
|
| 0.655, 0.746 |
| No. of measured, independent and observed [ | 13488, 3350, 2708 |
|
| 0.042 |
| (sin θ/λ)max (Å−1) | 0.703 |
| Refinement | |
|
| 0.041, 0.109, 1.03 |
| No. of reflections | 3350 |
| No. of parameters | 160 |
| H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
| Δρmax, Δρmin (e Å−3) | 0.35, −0.20 |
Computer programs: APEX3 (Bruker, 2018 ▸), SAINT (Bruker, 2016 ▸), SHELXT (Sheldrick, 2015a ▸), SHELXL (Sheldrick, 2015b ▸), OLEX2 (Dolomanov et al., 2009 ▸), PLATON (Spek, 2020 ▸), publCIF (Westrip, 2010 ▸) and Mercury (Macrae et al., 2008 ▸).
| C10H13N·3H2O | |
| Monoclinic, | Mo |
| Cell parameters from 5564 reflections | |
| θ = 2.6–30.5° | |
| µ = 0.09 mm−1 | |
| β = 106.093 (5)° | |
| Needle, colourless | |
| 0.51 × 0.09 × 0.05 mm |
| Bruker D8 Venture diffractometer | 3350 independent reflections |
| Radiation source: microfocus sealed X-ray tube, Incoatec Iµs | 2708 reflections with |
| HELIOS mirror optics monochromator | |
| Detector resolution: 10.4167 pixels mm-1 | θmax = 30.0°, θmin = 2.6° |
| ω and φ scans | |
| Absorption correction: multi-scan (SADABS; Bruker, 2016) | |
| 13488 measured reflections |
| Refinement on | Primary atom site location: dual |
| Least-squares matrix: full | Secondary atom site location: structure-invariant direct methods |
| Hydrogen site location: mixed | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 3350 reflections | (Δ/σ)max = 0.001 |
| 160 parameters | Δρmax = 0.35 e Å−3 |
| 0 restraints | Δρmin = −0.20 e Å−3 |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| O1 | 0.59406 (5) | 1.05257 (14) | 0.81663 (7) | 0.02252 (18) | |
| H1D | 0.6378 (12) | 0.971 (3) | 0.7983 (16) | 0.056 (5)* | |
| H1E | 0.5579 (14) | 1.109 (4) | 0.7482 (19) | 0.074 (6)* | |
| O3 | 0.39039 (6) | 0.63708 (15) | 1.01569 (7) | 0.02562 (19) | |
| H3C | 0.4235 (13) | 0.685 (3) | 0.9772 (17) | 0.062 (6)* | |
| H3D | 0.3929 (13) | 0.744 (4) | 1.0688 (17) | 0.062 (6)* | |
| O2 | 0.50431 (6) | 0.71399 (15) | 0.88618 (7) | 0.02490 (19) | |
| H2C | 0.5355 (14) | 0.830 (4) | 0.8673 (17) | 0.066 (6)* | |
| H2D | 0.5419 (14) | 0.609 (4) | 0.9175 (17) | 0.063 (6)* | |
| N1 | 0.71223 (6) | 0.77354 (16) | 0.76435 (7) | 0.01927 (19) | |
| C1 | 0.65506 (8) | 0.5945 (2) | 0.70453 (10) | 0.0274 (2) | |
| H1A | 0.616934 | 0.656109 | 0.635647 | 0.041* | |
| H1B | 0.620479 | 0.536110 | 0.751545 | 0.041* | |
| H1C | 0.689597 | 0.471912 | 0.686470 | 0.041* | |
| C2 | 0.77022 (7) | 0.68697 (19) | 0.86859 (9) | 0.0219 (2) | |
| H2A | 0.811282 | 0.578162 | 0.851550 | 0.026* | |
| H2B | 0.736418 | 0.607142 | 0.911910 | 0.026* | |
| C3 | 0.81920 (7) | 0.8817 (2) | 0.93665 (8) | 0.0219 (2) | |
| H3A | 0.779377 | 0.970548 | 0.967625 | 0.026* | |
| H3B | 0.864966 | 0.820396 | 0.999865 | 0.026* | |
| C4 | 0.85940 (6) | 1.03588 (18) | 0.86857 (8) | 0.0176 (2) | |
| C5 | 0.82967 (6) | 1.03240 (18) | 0.75240 (8) | 0.0173 (2) | |
| C6 | 0.76234 (7) | 0.86499 (19) | 0.69280 (8) | 0.0201 (2) | |
| H6A | 0.7237 (9) | 0.935 (2) | 0.6266 (12) | 0.025 (3)* | |
| H6B | 0.7924 (9) | 0.735 (3) | 0.6644 (12) | 0.031 (4)* | |
| C7 | 0.92500 (7) | 1.18598 (19) | 0.91984 (8) | 0.0198 (2) | |
| H7 | 0.945826 | 1.188163 | 0.998746 | 0.024* | |
| C8 | 0.96030 (7) | 1.33188 (19) | 0.85767 (9) | 0.0213 (2) | |
| H8 | 1.005049 | 1.432594 | 0.893817 | 0.026* | |
| C9 | 0.92978 (7) | 1.33005 (19) | 0.74177 (9) | 0.0220 (2) | |
| H9 | 0.953393 | 1.429876 | 0.698493 | 0.026* | |
| C10 | 0.86485 (7) | 1.18171 (19) | 0.69038 (8) | 0.0204 (2) | |
| H10 | 0.843808 | 1.181363 | 0.611478 | 0.024* |
| O1 | 0.0237 (4) | 0.0211 (4) | 0.0236 (4) | 0.0030 (3) | 0.0079 (3) | −0.0008 (3) |
| O3 | 0.0303 (4) | 0.0251 (4) | 0.0223 (4) | −0.0020 (3) | 0.0086 (3) | −0.0023 (3) |
| O2 | 0.0270 (4) | 0.0234 (4) | 0.0255 (4) | −0.0006 (3) | 0.0091 (3) | 0.0030 (3) |
| N1 | 0.0197 (4) | 0.0194 (4) | 0.0192 (4) | −0.0010 (3) | 0.0063 (3) | −0.0001 (3) |
| C1 | 0.0287 (6) | 0.0240 (6) | 0.0301 (6) | −0.0063 (5) | 0.0092 (5) | −0.0064 (4) |
| C2 | 0.0236 (5) | 0.0219 (5) | 0.0219 (5) | 0.0026 (4) | 0.0091 (4) | 0.0053 (4) |
| C3 | 0.0212 (5) | 0.0287 (6) | 0.0163 (4) | 0.0002 (4) | 0.0063 (4) | 0.0056 (4) |
| C4 | 0.0176 (5) | 0.0208 (5) | 0.0158 (4) | 0.0038 (4) | 0.0068 (4) | 0.0026 (4) |
| C5 | 0.0172 (5) | 0.0199 (5) | 0.0160 (4) | 0.0038 (4) | 0.0066 (4) | 0.0015 (4) |
| C6 | 0.0216 (5) | 0.0237 (5) | 0.0157 (4) | −0.0008 (4) | 0.0065 (4) | −0.0004 (4) |
| C7 | 0.0197 (5) | 0.0243 (5) | 0.0160 (4) | 0.0034 (4) | 0.0059 (4) | 0.0001 (4) |
| C8 | 0.0199 (5) | 0.0221 (5) | 0.0230 (5) | −0.0010 (4) | 0.0077 (4) | −0.0024 (4) |
| C9 | 0.0247 (5) | 0.0230 (5) | 0.0217 (5) | 0.0008 (4) | 0.0122 (4) | 0.0031 (4) |
| C10 | 0.0231 (5) | 0.0241 (5) | 0.0157 (4) | 0.0023 (4) | 0.0084 (4) | 0.0021 (4) |
| O1—H1D | 0.94 (2) | C3—H3B | 0.9900 |
| O1—H1E | 0.95 (2) | C3—C4 | 1.5124 (14) |
| O3—H3C | 0.86 (2) | C4—C5 | 1.3977 (13) |
| O3—H3D | 0.91 (2) | C4—C7 | 1.3964 (15) |
| O2—H2C | 0.92 (2) | C5—C6 | 1.5081 (15) |
| O2—H2D | 0.88 (2) | C5—C10 | 1.3968 (14) |
| N1—C1 | 1.4678 (14) | C6—H6A | 0.980 (14) |
| N1—C2 | 1.4708 (14) | C6—H6B | 1.022 (15) |
| N1—C6 | 1.4671 (13) | C7—H7 | 0.9500 |
| C1—H1A | 0.9800 | C7—C8 | 1.3865 (15) |
| C1—H1B | 0.9800 | C8—H8 | 0.9500 |
| C1—H1C | 0.9800 | C8—C9 | 1.3952 (15) |
| C2—H2A | 0.9900 | C9—H9 | 0.9500 |
| C2—H2B | 0.9900 | C9—C10 | 1.3833 (16) |
| C2—C3 | 1.5190 (16) | C10—H10 | 0.9500 |
| C3—H3A | 0.9900 | ||
| H1D—O1—H1E | 106.2 (17) | C4—C3—H3B | 109.1 |
| H3C—O3—H3D | 105.7 (18) | C5—C4—C3 | 119.87 (10) |
| H2C—O2—H2D | 106.2 (18) | C7—C4—C3 | 121.11 (9) |
| C1—N1—C2 | 110.91 (9) | C7—C4—C5 | 119.01 (9) |
| C6—N1—C1 | 109.43 (8) | C4—C5—C6 | 121.09 (9) |
| C6—N1—C2 | 110.12 (8) | C10—C5—C4 | 119.45 (10) |
| N1—C1—H1A | 109.5 | C10—C5—C6 | 119.44 (9) |
| N1—C1—H1B | 109.5 | N1—C6—H6A | 109.8 (8) |
| N1—C1—H1C | 109.5 | N1—C6—H6B | 109.3 (8) |
| H1A—C1—H1B | 109.5 | C5—C6—H6A | 110.2 (8) |
| H1A—C1—H1C | 109.5 | C5—C6—H6B | 108.5 (8) |
| H1B—C1—H1C | 109.5 | H6A—C6—H6B | 106.1 (11) |
| N1—C2—H2A | 109.7 | C4—C7—H7 | 119.4 |
| N1—C2—H2B | 109.7 | C8—C7—C4 | 121.21 (9) |
| N1—C2—C3 | 109.72 (9) | C8—C7—H7 | 119.4 |
| H2A—C2—H2B | 108.2 | C7—C8—H8 | 120.2 |
| C3—C2—H2A | 109.7 | C7—C8—C9 | 119.67 (10) |
| C3—C2—H2B | 109.7 | C9—C8—H8 | 120.2 |
| C2—C3—H3A | 109.1 | C8—C9—H9 | 120.3 |
| C2—C3—H3B | 109.1 | C10—C9—C8 | 119.46 (10) |
| H3A—C3—H3B | 107.8 | C10—C9—H9 | 120.3 |
| N1—C6—C5 | 112.77 (8) | C5—C10—H10 | 119.4 |
| C4—C3—C2 | 112.45 (9) | C9—C10—C5 | 121.19 (10) |
| C4—C3—H3A | 109.1 | C9—C10—H10 | 119.4 |
| N1—C2—C3—C4 | −49.12 (12) | C4—C5—C10—C9 | 1.27 (16) |
| C1—N1—C2—C3 | −171.72 (9) | C4—C7—C8—C9 | 0.23 (16) |
| C1—N1—C6—C5 | −173.75 (9) | C5—C4—C7—C8 | 0.56 (16) |
| C2—N1—C6—C5 | −51.59 (12) | C6—N1—C2—C3 | 67.00 (11) |
| C2—C3—C4—C5 | 18.69 (14) | C6—C5—C10—C9 | −176.74 (10) |
| C2—C3—C4—C7 | −162.56 (10) | C7—C4—C5—C6 | 176.68 (9) |
| C3—C4—C5—C6 | −4.55 (15) | C7—C4—C5—C10 | −1.29 (15) |
| C3—C4—C5—C10 | 177.48 (10) | C7—C8—C9—C10 | −0.28 (16) |
| C3—C4—C7—C8 | −178.19 (10) | C8—C9—C10—C5 | −0.47 (16) |
| C4—C5—C6—N1 | 20.70 (14) | C10—C5—C6—N1 | −161.33 (9) |
| H··· | ||||
| O1—H1 | 0.94 (2) | 1.81 (2) | 2.7394 (12) | 170.7 (18) |
| O1—H1 | 0.95 (2) | 1.81 (2) | 2.7635 (12) | 176 (2) |
| O3—H3 | 0.86 (2) | 1.96 (2) | 2.8070 (13) | 165.8 (19) |
| O3—H3 | 0.91 (2) | 1.84 (2) | 2.7461 (12) | 175.1 (19) |
| O2—H2 | 0.92 (2) | 1.84 (2) | 2.7538 (12) | 174.9 (19) |
| O2—H2 | 0.88 (2) | 1.88 (2) | 2.7512 (13) | 173 (2) |
| C6—H6 | 0.98 (2) | 2.49 (2) | 3.4531 (3) | 168.8 (2) |
| N1–C1 | 1.4678 (14) | N1–C6 | 1.4671 (13) |
| N1–C2 | 1.4708 (14) | C4–C5 | 1.3977 (13) |
| C1–N1–C2 | 110.91 (9) | N1–C2–C3 | 109.72 (9) |
| C1–N1–C6 | 109.43 (8) | N1–C6–C5 | 112.77 (8) |
| C6–N1–C2 | 110.12 (8) | C4–C3–C2 | 112.45 (9) |