Literature DB >> 32145686

Monobodies as enabling tools for structural and mechanistic biology.

Oliver Hantschel1, Matthew Biancalana2, Shohei Koide3.   

Abstract

Monobodies, built with the scaffold of the fibronectin type III domain, are among the most well-established synthetic binding proteins. They promote crystallization of challenging molecular systems. They have strong tendency to bind to functional sites and thus serve as drug-like molecules that perturb the biological functions of their targets. Monobodies lack disulfide bonds and thus they are particularly suited as genetically encoded reagents to be used intracellularly. This article reviews recent monobody-enabled studies that reveal new structures, molecular mechanisms and potential therapeutic opportunities. A systematic analysis of the crystal structures of monobody-target complexes suggests important attributes that make monobodies effective crystallization chaperones.
Copyright © 2020 Elsevier Ltd. All rights reserved.

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Year:  2020        PMID: 32145686      PMCID: PMC7370805          DOI: 10.1016/j.sbi.2020.01.015

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  40 in total

1.  Dissection of the BCR-ABL signaling network using highly specific monobody inhibitors to the SHP2 SH2 domains.

Authors:  Fern Sha; Emel Basak Gencer; Sandrine Georgeon; Akiko Koide; Norihisa Yasui; Shohei Koide; Oliver Hantschel
Journal:  Proc Natl Acad Sci U S A       Date:  2013-08-26       Impact factor: 11.205

2.  Structures of a Na+-coupled, substrate-bound MATE multidrug transporter.

Authors:  Min Lu; Jindrich Symersky; Martha Radchenko; Akiko Koide; Yi Guo; Rongxin Nie; Shohei Koide
Journal:  Proc Natl Acad Sci U S A       Date:  2013-01-22       Impact factor: 11.205

Review 3.  Protein prenylation: unique fats make their mark on biology.

Authors:  Mei Wang; Patrick J Casey
Journal:  Nat Rev Mol Cell Biol       Date:  2016-01-21       Impact factor: 94.444

4.  A dominant conformational role for amino acid diversity in minimalist protein-protein interfaces.

Authors:  Ryan N Gilbreth; Kaori Esaki; Akiko Koide; Sachdev S Sidhu; Shohei Koide
Journal:  J Mol Biol       Date:  2008-06-12       Impact factor: 5.469

5.  A CLC-type F-/H+ antiporter in ion-swapped conformations.

Authors:  Nicholas B Last; Randy B Stockbridge; Ashley E Wilson; Tania Shane; Ludmila Kolmakova-Partensky; Akiko Koide; Shohei Koide; Christopher Miller
Journal:  Nat Struct Mol Biol       Date:  2018-06-25       Impact factor: 15.369

Review 6.  Adnectins: engineered target-binding protein therapeutics.

Authors:  D Lipovsek
Journal:  Protein Eng Des Sel       Date:  2010-11-10       Impact factor: 1.650

7.  Targeting the SH2-kinase interface in Bcr-Abl inhibits leukemogenesis.

Authors:  Florian Grebien; Oliver Hantschel; John Wojcik; Ines Kaupe; Boris Kovacic; Arkadiusz M Wyrzucki; Gerald D Gish; Sabine Cerny-Reiterer; Akiko Koide; Hartmut Beug; Tony Pawson; Peter Valent; Shohei Koide; Giulio Superti-Furga
Journal:  Cell       Date:  2011-10-14       Impact factor: 41.582

8.  ETO family protein Mtgr1 mediates Prdm14 functions in stem cell maintenance and primordial germ cell formation.

Authors:  Nataliya Nady; Ankit Gupta; Ziyang Ma; Tomek Swigut; Akiko Koide; Shohei Koide; Joanna Wysocka
Journal:  Elife       Date:  2015-11-02       Impact factor: 8.140

9.  Structural and functional dissection of the DH and PH domains of oncogenic Bcr-Abl tyrosine kinase.

Authors:  Sina Reckel; Charlotte Gehin; Delphine Tardivon; Sandrine Georgeon; Tim Kükenshöner; Frank Löhr; Akiko Koide; Lena Buchner; Alejandro Panjkovich; Aline Reynaud; Sara Pinho; Barbara Gerig; Dmitri Svergun; Florence Pojer; Peter Güntert; Volker Dötsch; Shohei Koide; Anne-Claude Gavin; Oliver Hantschel
Journal:  Nat Commun       Date:  2017-12-13       Impact factor: 14.919

10.  Cork-in-Bottle Occlusion of Fluoride Ion Channels by Crystallization Chaperones.

Authors:  Benjamin C McIlwain; Simon Newstead; Randy B Stockbridge
Journal:  Structure       Date:  2018-03-08       Impact factor: 5.006

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  8 in total

1.  Development of light-responsive protein binding in the monobody non-immunoglobulin scaffold.

Authors:  César Carrasco-López; Evan M Zhao; Agnieszka A Gil; Nathan Alam; Jared E Toettcher; José L Avalos
Journal:  Nat Commun       Date:  2020-08-13       Impact factor: 14.919

2.  A Protein-Based, Long-Acting HIV-1 Fusion Inhibitor with an Improved Pharmacokinetic Profile.

Authors:  Wei Xu; Zhe Cong; Qianyu Duan; Qian Wang; Shan Su; Rui Wang; Lu Lu; Jing Xue; Shibo Jiang
Journal:  Pharmaceuticals (Basel)       Date:  2022-03-30

3.  Strategic design to create HER2-targeting proteins with target-binding peptides immobilized on a fibronectin type III domain scaffold.

Authors:  Wanaporn Yimchuen; Tetsuya Kadonosono; Yumi Ota; Shinichi Sato; Maika Kitazawa; Tadashi Shiozawa; Takahiro Kuchimaru; Masumi Taki; Yuji Ito; Hiroyuki Nakamura; Shinae Kizaka-Kondoh
Journal:  RSC Adv       Date:  2020-04-17       Impact factor: 4.036

4.  Conformational interconversion of MLKL and disengagement from RIPK3 precede cell death by necroptosis.

Authors:  Sarah E Garnish; Yanxiang Meng; Akiko Koide; Jarrod J Sandow; Eric Denbaum; Annette V Jacobsen; Wayland Yeung; Andre L Samson; Christopher R Horne; Cheree Fitzgibbon; Samuel N Young; Phoebe P C Smith; Andrew I Webb; Emma J Petrie; Joanne M Hildebrand; Natarajan Kannan; Peter E Czabotar; Shohei Koide; James M Murphy
Journal:  Nat Commun       Date:  2021-04-13       Impact factor: 14.919

5.  SYNBIP: synthetic binding proteins for research, diagnosis and therapy.

Authors:  Xiaona Wang; Fengcheng Li; Wenqi Qiu; Binbin Xu; Yanlin Li; Xichen Lian; Hongyan Yu; Zhao Zhang; Jianxin Wang; Zhaorong Li; Weiwei Xue; Feng Zhu
Journal:  Nucleic Acids Res       Date:  2022-01-07       Impact factor: 16.971

Review 6.  Emerging new therapeutic antibody derivatives for cancer treatment.

Authors:  Shijie Jin; Yanping Sun; Xiao Liang; Xinyu Gu; Jiangtao Ning; Yingchun Xu; Shuqing Chen; Liqiang Pan
Journal:  Signal Transduct Target Ther       Date:  2022-02-07

7.  Synthesis of the l- and d-SH2 domain of the leukaemia oncogene Bcr-Abl.

Authors:  Nina Schmidt; Frank Abendroth; Olalla Vázquez; Oliver Hantschel
Journal:  RSC Chem Biol       Date:  2022-07-06

8.  Tuning SAS-6 architecture with monobodies impairs distinct steps of centriole assembly.

Authors:  Georgios N Hatzopoulos; Tim Kükenshöner; Niccolò Banterle; Tatiana Favez; Isabelle Flückiger; Virginie Hamel; Santiago Andany; Georg E Fantner; Oliver Hantschel; Pierre Gönczy
Journal:  Nat Commun       Date:  2021-06-21       Impact factor: 14.919

  8 in total

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