Literature DB >> 32140772

Computer and Experimental Simulation of Alloxazine Synthesis from Gamma Irradiation of Amino Acids on Iceland Spar: A Prebiotic Chemistry Perspective.

Ernesto Mendoza-Torres1,2, Jorge Cruz-Catañeda2,3, Alicia Negrón-Mendoza2, Alejandro Heredia4.   

Abstract

On ancient Earth, environmental conditions favored prebiotic chemical reactions. In the Archean, some molecules with conjugated rings might have been synthesized, displaying structural stability in the Archean in the presence of ionizing radiation and hydration-dehydration events. Additionally, it is suggested that on ancient Earth, calcite was a common mineral promoting organic compound synthesis. In the present work a study of the interaction of amino acid mixtures with the (104) surface of calcite is presented. Our preliminary results show the abiotic synthesis of alloxazine (a flavin with relevant photochemical properties). Computer simulations were performed in HyperChem 8.0.1. by means of MM+ molecular mechanics and PM3 semi-empirical methods, in 27 possible amino acid trimers of alanine, glycine and lysine. Alloxazine formation is possible by the gamma irradiation of amino acids. The computer simulations show that trimers GGG and GGA promote the further transformation from diketopiperazines (DKP's) and KGK to alloxazine. The computer simulations with free radicals are not stable when alloxazine is interacting with the calcite surface. Experiments in anoxygenic environments with hydration-dehydration events in gamma irradiated samples allow the abiotic formation of flavins, DKP's and a heterocycle compound with possible relevance in prebiotic chemistry.

Entities:  

Keywords:  Alloxazine; Calcite mineral; MM+ molecular mechanics; Mineral surface; PM3 semi-empirical method; Prebiotic synthesis

Mesh:

Substances:

Year:  2020        PMID: 32140772     DOI: 10.1007/s00239-020-09933-5

Source DB:  PubMed          Journal:  J Mol Evol        ISSN: 0022-2844            Impact factor:   2.395


  22 in total

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Authors:  Martin Schoonen; Alexander Smirnov; Corey Cohn
Journal:  Ambio       Date:  2004-12       Impact factor: 5.129

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Authors:  F G Mosqueira; S Ramos-Bernal; A Negrón-Mendoza
Journal:  Biosystems       Date:  2007-09-21       Impact factor: 1.973

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Journal:  Biosystems       Date:  1981       Impact factor: 1.973

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Journal:  J Org Chem       Date:  1999-03-19       Impact factor: 4.354

8.  Atmospheric composition and climate on the early Earth.

Authors:  James F Kasting; M Tazewell Howard
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2006-10-29       Impact factor: 6.237

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Authors:  R M De Graaf; J Visscher; Y Xu; G Arrhenius; A W Schwartz
Journal:  J Mol Evol       Date:  1998-11       Impact factor: 2.395

10.  Mineral surface chemistry control for origin of prebiotic peptides.

Authors:  Valentina Erastova; Matteo T Degiacomi; Donald G Fraser; H Chris Greenwell
Journal:  Nat Commun       Date:  2017-12-11       Impact factor: 14.919

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