Literature DB >> 32138665

Transcriptome co-expression network analysis identifies key genes and regulators of ripening kiwifruit ester biosynthesis.

Aidi Zhang1,2, Qiuyun Zhang3, Jianzhao Li4, Hansheng Gong5,6, Xinguang Fan5, Yanqing Yang5, Xiaofen Liu3, Xueren Yin7.   

Abstract

BACKGROUND: Aroma is an important organoleptic quality for fruit and has a large influence on consumer preference. Kiwifruit esters undergo rapid and substantial changes contributing to the flavor during fruit ripening. Part of enzymes and their coding genes have been indicated potential candidates for flavor-related esters synthesis. However, there still exist obvious gaps in the biosynthetic pathways of esters and the mechanisms regulating ester biosynthesis in kiwifruit remain unknown.
RESULTS: Using gas chromatography-mass spectrometry (GC-MS), volatile compounds of kiwifruit were quantified in response to ethylene (ETH, 100 μl/l, 24 h, 20 °C) and 1-methylcyclopropene (1-MCP, 1 μl/l, 24 h, 20 °C). The results indicated that esters showed the most substantial changes enhanced by ethylene and were inhibited by 1-MCP. Correlations between RNA-seq results and concentrations of esters, constructed using Weighted Gene Co-Expression Network Analysis (WGCNA) indicated that three structural genes (fatty acid desaturase, AdFAD1; aldehyde dehydrogenase, AdALDH2; alcohol acyltransferase, AdAT17) had similar expression patterns that paralled the changes in total ester content, and AdFAD1 transcripts exhibited the highest correlation. In order to search for potential regulators for ester biosynthesis, 14 previously reported ethylene-responsive transcription factors (TFs) were included in the correlation analysis with esters and their biosynthetic genes. Using dual-luciferase assay, the in vivo regulatory activities of TFs on ester biosynthetic gene promoters were investigated and the results indicated that AdNAC5 and AdDof4 (DNA binding with one finger) trans-activated and trans-suppressed the AdFAD1 promoter.
CONCLUSIONS: The present study advanced the molecular basis of ripening-related ester biosynthesis in kiwifruit by identifying three biosynthetic related genes AdFAD1, AdALDH2 and AdAT17 by transcriptome analysis, and highlighted the function of two TFs by transactivation studies.

Entities:  

Keywords:  Aroma; Dof; Ester biosynthesis; Kiwifruit; NAC; RNA-seq; Ripening fruit; Transcriptional regulation

Year:  2020        PMID: 32138665     DOI: 10.1186/s12870-020-2314-9

Source DB:  PubMed          Journal:  BMC Plant Biol        ISSN: 1471-2229            Impact factor:   4.215


  5 in total

1.  Alcohol acyl transferase genes at a high-flavor intensity locus contribute to ester biosynthesis in kiwifruit.

Authors:  Edwige J F Souleyre; Niels J Nieuwenhuizen; Mindy Y Wang; Robert A Winz; Adam J Matich; Nadeesha R Ileperuma; Haidee Tang; Samantha J Baldwin; Tianchi Wang; Blake W List; Kirsten A Hoeata; Elizabeth A Popowski; Ross G Atkinson
Journal:  Plant Physiol       Date:  2022-09-28       Impact factor: 8.005

2.  A gene expression atlas for kiwifruit (Actinidia chinensis) and network analysis of transcription factors.

Authors:  Lara Brian; Ben Warren; Peter McAtee; Jessica Rodrigues; Niels Nieuwenhuizen; Asher Pasha; Karine M David; Annette Richardson; Nicholas J Provart; Andrew C Allan; Erika Varkonyi-Gasic; Robert J Schaffer
Journal:  BMC Plant Biol       Date:  2021-02-27       Impact factor: 4.215

3.  Integration of Transcriptome and Metabolome Provides New Insights to Flavonoids Biosynthesis in Dendrobium huoshanense.

Authors:  Yingdan Yuan; Jiajia Zuo; Hanyue Zhang; Runze Li; Maoyun Yu; Sian Liu
Journal:  Front Plant Sci       Date:  2022-03-14       Impact factor: 5.753

4.  Consensus co-expression network analysis identifies AdZAT5 regulating pectin degradation in ripening kiwifruit.

Authors:  Qiu-Yun Zhang; Jun Ge; Xin-Cheng Liu; Wen-Qiu Wang; Xiao-Fen Liu; Xue-Ren Yin
Journal:  J Adv Res       Date:  2021-12-04       Impact factor: 12.822

5.  The Effect of 1-MCP on the Expression of Carotenoid, Chlorophyll Degradation, and Ethylene Response Factors in 'Qihong' Kiwifruit.

Authors:  Yanfei Liu; Guowen Lv; Jiaxin Chai; Yaqi Yang; Fengwang Ma; Zhande Liu
Journal:  Foods       Date:  2021-12-05
  5 in total

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