| Literature DB >> 32131536 |
Mohd Imran1, Md Afroz Bakht2, Abida Khan1, Md Tauquir Alam1, El Hassane Anouar2, Mohammed B Alshammari2, Noushin Ajmal3, Archana Vimal4, Awanish Kumar4, Yassine Riadi5.
Abstract
We have developed a new idea to synthesize a key intermediate molecule by utilizing deep eutectic solvent (DES) and ultrasound in a multistep reaction to ensure process cost-effectiveness. To confirm the stability of reagents withEntities:
Keywords: DES; DFT; analgesic; anti-inflammatory; lipid peroxidation; molecular docking; thiazole-indole; ulcerogenic; ultrasound
Mesh:
Substances:
Year: 2020 PMID: 32131536 PMCID: PMC7179205 DOI: 10.3390/molecules25051118
Source DB: PubMed Journal: Molecules ISSN: 1420-3049 Impact factor: 4.411
Scheme 1The proposed mechanism involved in the formation of key intermediate, 3-(2-(4-(2-oxochroman-3-yl) thiazol-2-yl) hydrazono) indolin-2-one (3) using deep eutectic solvent (DES).
Figure 1Energetic diagram of starting materials in the presence and absence of DES (dotted lines).
Anti-inflammatory activity of 1-(Substituted phenyl amino methyl)-3-(2-(4-(2-oxochroman-3-yl) thiazol-2-yl) hydrazono) indolin-2-one (4a–n).
| Compound | % Age Inhibition of Rat Paw Edema (Dose = 10 mgkg−1) | Potency | |
|---|---|---|---|
| 2 H | 4 H | ||
| Indomethacin | 66.34 ± 0.051 | 82.05 ± 0.08 | 1.00 |
|
| 38.29 ± 0.016 | 5.57 ± 0.041 | 0.06 |
|
| 59.29 ± 0.73 * | 45.81 ± 0.069 | 0.55 |
|
| 59.29 ± 0.143 * | 30.17 ± 0.294 | 0.36 |
|
| 51.92 ± 0.337 | 6.98 ± 0.315 | 0.08 |
|
| 62.24 ± 0.080 ** | 48.60 ± 0.090 ** | 0.59 |
|
| 48.377 ± 0.219 * | 72.42 ± 0.183 * | 0.88 |
|
| 53.57 ± 0.160 * | 77.94 ± 0.184 *** | 0.94 |
|
| 35.39 ± 0.273 | 64.69 ± 0.245 | 0.78 |
|
| 31.268 ± 0.188 | 63.95 ±0.218 | 0.77 |
|
| 53.81 ± 0.120 ** | 77.906 ± 0.171 ** | 0.94 |
|
| 38.095 ± 0.214 | 70.75 ± 0.165 | 0.86 |
|
| 54.76 ± 0.228 ** | 80.94 ± 0.149 *** | 0.98 |
|
| 53.27 ± 0.183 * | 78.42 ±0.183 ** | 0.95 |
|
| 42.57 ± 0.213 | 69.58 ± 0.133 | 0.84 |
* p < 0.05, ** p < 0.01, *** p < 0.001.
Analgesic activity of 1-(substituted phenyl amino methyl)-3-(2-(4-(2-oxochroman-3-yl) thiazol-2-yl) hydrazono) indolin-2-one (4a–n).
| Compound | Mean with ± SEM | % Analgesic Activity | Potency |
|---|---|---|---|
| Indomethacin | 8.55 ± 0.394 | 73.61 ± 0.315 * | 1.00 |
|
| 17.00 ± 0.2582 | 47.54 ± 0.7071 * | 0.64 |
|
| 24.00 ± 0.3651 | 25.94 ± 0.5802 ** | 0.35 |
|
| 13.00 ± 0.2582 | 59.88 ± 0.8458 * | 0.81 |
|
| 18.50 ± 0.4282 | 42.91 ± 0.710 *** | 0.58 |
|
| 16.88 ± 0.222 | 47.91 ± 1.0049 * | 0.65 |
|
| 9.93 ± 0.386 | 69.36 ± 0.5845 * | 0.94 |
|
| 20.09 ± 0.3561 | 38.01 ± 1.0035 ** | 0.51 |
|
| 23.83 ± 0.3073 | 26.47 ± 0.3165 * | 0.35 |
|
| 10.93 ± 0.3128 | 66.27 ± 1.0072 * | 0.90 |
|
| 17.13 ± 0.539 | 47.14 ± 0.4018 *** | 0.64 |
|
| 29.83 ± 0.3073 | 7.96 ± 0.4318 * | 0.10 |
|
| 17.83 ± 0.3079 | 44.98 ± 0.3361 * | 0.61 |
|
| 21.83 ± 0.2051 | 32.64 ± 0.8454 ** | 0.44 |
|
| 10.00 ± 0.3651 | 69.14 ± 0.6892 * | 0.93 |
* p < 0.05, ** p < 0.01, *** p < 0.001.
Ulcerogenic activity and lipid peroxidation of 1-(substituted phenyl amino methyl)-3-(2-(4-(2- oxochroman-3-yl) thiazol-2- yl) hydrazono)indolin-2-one.
| Compound | Severity Index | Nanomoles of MDA Content ± SEM/ |
|---|---|---|
| Control | 0.0 | 3.16 ± 0.12 * |
| Indomethacin | 4.500 ± 0.316 | 6.71 ± 0.18 * |
|
| 0.666 ± 0.105 * | 4.26 ± 0.12 * |
|
| 0.666 ± 0.105 * | 4.08 ± 0.22 * |
|
| 0.500 ± 0.129 | 3.89 ± 0.17 * |
|
| 0.833 ± 0.210 * | 4.81 ± 0.13 * |
* p < 0.05.
Bond dissociation enthalpies (BDEs) (kcal/mol) of i-NH groups of the indolin-2-ones (In-H) synthesized derivatives and its corresponding ionization potential energies calculated at the B3P86/6-31+G(d,p) level of theory.
| Compound | IP (eV) | 17-NH | 26-NH | Lipid Peroxidation Inhibition |
|---|---|---|---|---|
|
| −5.96 | 62.03 | 72.58 | 4.08 ± 0.22 |
|
| −5.97 | 62.08 | 75.60 | 4.26 ± 0.12 |
|
| −6.04 | 62.05 | 72.84 | 3.89 ± 0.17 |
|
| −5.80 | 62.05 | 72.02 | 4.81 ± 0.13 |
Figure 2Optimized structure with the numbering of In-H synthesized derivatives.
Figure 3Ramachandran plot validating the prepared protein structure of cyclooxygenase (COX-2) from (a) mouse (PDB ID 3NT1) (b) human (PDB ID: 5F19).
Figure 4Predicted binding site in COX-2 (target protein) from (a) mouse (PDB ID 3NT1) (b) human (PDB ID: 5F19).
Summary of molecular docking score of different ligands against Cox-2 (target protein) from mouse (3NT1) and human (5F19).
| S. No | Ligand | Docking Score (kcal/mol) | E-Model Score (kcal/mol) | Energy (kcal/mol) | |||
|---|---|---|---|---|---|---|---|
| Mouse | Human | Mouse | Human | Mouse | Human | ||
| 1 |
| −7.050 | −6.834 | −84.018 | −85.694 | −59.395 | −60.236 |
| 2 |
| −8.552 | −7.398 | −93.570 | −91.718 | −61.736 | −63.562 |
| 3 |
| −6.847 | −7.368 | −89.139 | −90.888 | −65.402 | −63.532 |
| 4 |
| −6.271 | −7.419 | −86.746 | −90.209 | −64.531 | −63.856 |
| 5 |
| −6.995 | −7.200 | −88.939 | −90.453 | −63.810 | −64.065 |
| 6 |
| −6.071 | −6.859 | −78.327 | −79.342 | −58.256 | −59.290 |
| 7 |
| −7.247 | −7.426 | −92.213 | −92.642 | −65.665 | −64.682 |
| 8 |
| −8.422 | −7.760 | −99.511 | −97.487 | −65.199 | −66.691 |
| 9 |
| −7.242 | −7.446 | −92.293 | −93.023 | −64.084 | −64.835 |
| 10 |
| −8.120 | −7.250 | −97.069 | −89.953 | −64.452 | −62.022 |
| 11 |
| −7.887 | −7.261 | −94.176 | −90.861 | −63.958 | −63.245 |
| 12 |
| −8.447 | −7.544 | −95.832 | −81.672 | −65.289 | −56.454 |
| 13 |
| −7.898 | −6.803 | −85.845 | −84.328 | −59.419 | −60.257 |
| 14 |
| −6.693 | −7.077 | −85.842 | −87.991 | −62.568 | −61.802 |
| 15 | Indomethacin | −6.324 | −6.109 | −57.309 | −58.132 | −39.727 | −40.695 |
Figure 5Test ligands and control drug (a) 4f, (b) 4n, (c) Indomethacin, docked inside the binding pocket of COX-2 from a mouse.
Figure 6Test ligands and control drug (a) 4f, (b) 4n, (c) Indomethacin, docked inside the binding pocket of COX-2 from the human.
Type of interaction and amino acid residues involved in that interaction inside the binding pocket of the Cox-2 enzyme from mouse (4NT1).
| S. No | Ligand | Types of Interaction | Interacting Residues |
|---|---|---|---|
| 1 |
| Solvation effect | - |
| 2 |
| 1 H-bond, 1 pi–pi stacking | Phe 142, Asn 37 |
| 3 |
| 1 pi–pi stacking | Phe 142 |
| 4 |
| 1 H-bond, 1 pi–pi stacking | Trp, 139, Phe, 142 |
| 5 |
| 2 H-bond | Leu 145, Ser 146 |
| 6 |
| Solvation effect | - |
| 7 |
| 2 H-bond | Leu 145, Ser 146 |
| 8 |
| 1 H-bond, 1 pi–pi stacking | Phe 142, Gly 225 |
| 9 |
| 2 pi–pi stacking | Phe 142, Arg 133 |
| 10 |
| 3 H-bond | Glu 142, Arg 376 |
| 11 |
| 1 pi–pi stacking | Phe 142 |
| 12 |
| 3 H-bond, 1 pi–pi stacking | Phe 142, Val 228, Asn 375, Asn 537 |
| 13 |
| 1 H-bond, 1 pi–pi stacking | Phe 142, Asn 375 |
| 14 |
| 2 H-bond | Arg 376 |
| 15 | Indomethacin | 2 H-bond, 1 pi–pi stacking | Phe 142, Arg 376 |
Type of interaction and amino acid residues involved in that interaction inside the binding pocket of the Cox-2 enzyme from mouse (5F19).
| S. No | Ligand | Types of Interaction | Interacting Residues |
|---|---|---|---|
| 1 |
| 1 pi–pi stacking | Phe 142 |
| 2 |
| 2 pi–pi stacking | Phe 142, Arg 333 |
| 3 |
| 2 pi–pi stacking | Phe 142, Arg 333 |
| 4 |
| 2 pi–pi stacking | Phe 142, Arg 333 |
| 5 |
| 2 H-bond | Leu 145, Ser 146 |
| 6 |
| Solvation effect | - |
| 7 |
| 3 H-bonds | Leu 145, Ser 146, Nag 605 |
| 8 |
| 2 H-bond, 1 pi–pi stacking | Arg 333, Arg 376 |
| 9 |
| 2 pi–pi stacking | Phe 142, Arg 333 |
| 10 |
| 2 H-bond | Glu140, Arg 376 |
| 11 |
| 1 H-bond, pi–pi stacking | Trp 139, Phe 142, Arg 333 |
| 12 |
| 2 H-bond, 2 pi–pi stacking | Phe 142, Gln 241, Arg 333 |
| 13 |
| 2 pi–pi stacking | Phe 142, Arg 333 |
| 14 |
| 2 pi–pi stacking | Phe 142, Arg 333 |
| 15 | Indomethacin | 2 H-bonds | Arg 376 |
Figure 7Ligand interaction diagram of test ligand/control drug (a) 4f, (b) 4n, (c) Indomethacin, with the target protein COX-2 from the mouse.
Figure 8Ligand interaction diagram of test ligand/control drug (a) 4f, (b) 4n, (c) Indomethacin, with the target protein COX-2 from the human.
Absorption distribution metabolism and excreation (ADME) profiling of all the ligands (4a–n) synthesized to be used as a drug candidate.
| S. No | Ligand | Mol. Wt. | QPlogPo/w (Octanol/ Water) | Apparent Caco-2 Permeability (QPP Caco) | Brain/Blood Partition Coefficient (QPlogBB) | Apparent MDCK Permeability (QppMDCK) | Human Oral Absorption % (QP%) | Lipinski Rule of 5 Violations (Rule of 5) |
|---|---|---|---|---|---|---|---|---|
| 1 |
| 493.539 | 5.757 | 574.519 | −1.128 | 540.552 | 100 | 1 |
| 2 |
| 511.529 | 5.966 | 521.054 | −1.100 | 880.621 | 84.589 | 2 |
| 3 |
| 527.984 | 6.226 | 521.126 | −1.051 | 1201.640 | 86.113 | 2 |
| 4 |
| 572.435 | 6.306 | 521.273 | −1.043 | 1292.410 | 86.581 | 2 |
| 5 |
| 538.536 | 4.878 | 85.123 | −2.223 | 59.380 | 64.132 | 2 |
| 6 |
| 527.984 | 6.047 | 479.473 | −1.121 | 809.359 | 84.417 | 2 |
| 7 |
| 583.534 | 4.121 | 10.166 | −3.511 | 5.971 | 43.182 | 2 |
| 8 |
| 484.491 | 2.102 | 23.583 | −1.616 | 18.982 | 50.863 | 1 |
| 9 |
| 545.974 | 6.468 | 578.335 | −0.889 | 2174.980 | 88.336 | 2 |
| 10 |
| 494.927 | 4.735 | 329.574 | −1.421 | 3.000 | 100 | 0 |
| 11 |
| 494.927 | 4.703 | 313.043 | −1.444 | 296.440 | 100 | 0 |
| 12 |
| 538.536 | 5.003 | 68.904 | −2.393 | 54.611 | 50.266 | 3 |
| 13 |
| 507.566 | 6.083 | 574.067 | −1.164 | 540.037 | 86.024 | 2 |
| 14 |
| 507.566 | 6.027 | 619.284 | −1.085 | 586.303 | 86.288 | 2 |
| 15 | Indomethacin | 373.835 | 3.679 | 185.783 | −0.614 | 251.855 | 89.095 | 0 |
Recommended values: Molecular weight: 130.0–725; QPlogBB: −3.0–1.2; QPPlogCaco: 25 poor, >500 great; QppMDCK: 25 poor, >500 great; QPlogPo/w: −2.0–6.5; QP%: >80% is high, <25% is poor; Rule of 5: Maximum is four.
Scheme 2Schematic representation of the synthesis of compounds (4a–n) via key intermediate (3) isolated from deep eutectic solvent and ultrasound blend of technique.