| Literature DB >> 32130259 |
Mariana Bezamat1, Emanuelle J Cunha1,2, Adriana M Modesto3, Alexandre R Vieira1,3, Juan M Taboas1.
Abstract
Aquaporins (AQPs) are membrane channels that provide for transport of water and other small molecules across the lipid bilayer of cells. Their function is essential for physiologic processes such as cell volume regulation, chondrocyte hypertrophy during appendicular skeletal growth, water reabsorption in the kidney tubules, and water excretion by the salivary glands. The ten AQP isoforms show tissue specificity and are involved in different pathologies and inflammatory diseases. This study addresses the hypothesis that arthritis, periodontitis, and temporomandibular joint disorders (TMDs) can be influenced by variation in the AQP genes at 12q13.12 locus. Salivary samples of 688 individuals were obtained from the Dental Registry and DNA Repository project at the University of Pittsburgh. Ten polymorphisms in four AQP genes (AQP1, 2, 5, and 6) were genotyped and correlated to disease status as reported by patients. Associations were found between the single nucleotide polymorphism (SNP) rs467323 in AQP2 and TMD in both genotypic (p = 0.03) and recessive (p = 0.02) models, and between rs1996315 in AQP6 and periodontitis (p = 0.05). Combined analysis of TMD and periodontitis showed an association with rs3741559 in AQP2 (p = 0.02). When conducting haplotype analysis of rs467323 and rs10875989 in AQP2, the haplotype CT showed an association with the TMD phenotype (p = 0.007). Our results suggest that the aquaporin locus at 12q13.12 may contribute to the pathogenesis of inflammatory conditions such as periodontitis and TMD. Thus, oral and skeletal health are correlated and potential susceptibility screening strategies may be developed.Entities:
Year: 2020 PMID: 32130259 PMCID: PMC7055872 DOI: 10.1371/journal.pone.0229245
Source DB: PubMed Journal: PLoS One ISSN: 1932-6203 Impact factor: 3.240
Details of the SNPs investigated in this study.
| Chromosome | Gene | SNP marker | Base Position | Location | Consequence | Base change |
|---|---|---|---|---|---|---|
| 7 | rs17159702 | 30,919,387 | intron | Intron Variant | CT | |
| 12 | rs467323 | 49,955,982 | intron | 3 Prime UTR Variant | CT | |
| 12 | rs3741559 | 49,951,193 | intron | Intron Variant | AG | |
| 12 | rs461872 | 49,951,423 | intron | Intron Variant | AG | |
| 12 | rs2878771 | 49,958,610 | intron | 3 Prime UTR Variant | CG | |
| 12 | rs10875989 | 49,957,292 | intron | 3 Prime UTR Variant | CT | |
| 12 | rs296763 | 49,969,231 | intron | Non-Coding Transcript Variant | CG | |
| 12 | rs3759129 | 49,960,654 | intron | 2KB Upstream Variant | CA | |
| 12 | rs3736309 | 49,964,271 | intron | Intron Variant | GA | |
| 12 | rs1996315 | 49,970,924 | intron | 2KB Upstream Variant | GA |
Fig 1Illustrates the AQP 2, 5 and 6 markers of the 12q13.12 aquaporin locus.
The different color intensities represent a different D prime value, the stronger the red, the closer a D’ value is to 1.
Summarizes the nominal results of both phenotypic isolated and combined analyses.
| Phenotype | A1 / A2 | Gene | SNP | Model | Affected | Unaffected | X2 | p value | Relative risk of carrying one copy of the risk allele |
|---|---|---|---|---|---|---|---|---|---|
| Periodontitis | G / A | rs1996315 | Dominant | 106/23 | 150/55 | 3.583 | 0.058 | 1.2 | |
| Temporomandibular joint disorder (TMD) | C / T | rs467323 | Genotypic | 18/84/56 | 80/178/149 | 6.706 | 0.03 | 1.46 | |
| rs467323 | Recessive | 18/140 | 80/327 | 5.421 | 0.02 | ||||
| Periodontitis and TMD | A / G | rs3741559 | Allelic | 25/177 | 45/171 | 5.355 | 0.02 | 2.15 |
Summarizes the haplotype significant association identified between rs467323 and rs10875989 block markers using the haploview software.
| Haplotype Associations rs467323/rs10875989 block markers | Frequency | Case, Control Ratios | Chi Square | p value |
|---|---|---|---|---|
| TT | 0.639 | 172.1: 91.9, 424.9: 245.1 | 0.257 | 0.6122 |
| CC | 0.283 | 77.5: 186.5, 187.1: 482.9 | 0.194 | 0.6596 |
| CT | 0.051 | 5.4: 258.6, 42.6: 627.4 | 7.212 | |
| TC | 0.026 | 8.9: 255.1, 15.4: 654.6 | 0.9 | 0.3428 |