Literature DB >> 32125579

CCMRD: a solid-state NMR database for complex carbohydrates.

Xue Kang1, Wancheng Zhao2, Malitha C Dickwella Widanage2, Alex Kirui2, Uluc Ozdenvar2, Tuo Wang3.   

Abstract

Carbohydrates are essential to various life activities in living organisms and serve as the central component in many biomaterials. As an emerging technique with steadily improving resolution, solid-state Nuclear Magnetic Resonance (NMR) spectroscopy has the unique capability in revealing the polymorphic structure and heterogeneous dynamics of insoluble complex carbohydrates. Here, we report the first solid-state NMR database for complex carbohydrates, Complex Carbohydrates Magnetic Resonance Database (CCMRD). This database currently holds the chemical shift information of more than four hundred solid-state NMR compounds and expects rapid expansion. CCMRD provides open portals for data deposition and supports search options based on NMR chemical shifts, carbohydrate names, and compound classes. With the timely implementation, this platform will facilitate spectral analysis and structure determination of carbohydrates and promote software development to benefit the research community. The database is freely accessible at www.ccmrd.org.

Entities:  

Keywords:  Carbohydrates; Database; Polysaccharides; Solid-state NMR

Mesh:

Substances:

Year:  2020        PMID: 32125579     DOI: 10.1007/s10858-020-00304-2

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  8 in total

Review 1.  Solid-State NMR Investigations of Extracellular Matrixes and Cell Walls of Algae, Bacteria, Fungi, and Plants.

Authors:  Nader Ghassemi; Alexandre Poulhazan; Fabien Deligey; Frederic Mentink-Vigier; Isabelle Marcotte; Tuo Wang
Journal:  Chem Rev       Date:  2021-12-08       Impact factor: 72.087

Review 2.  Biomolecular complex viewed by dynamic nuclear polarization solid-state NMR spectroscopy.

Authors:  Arnab Chakraborty; Fabien Deligey; Jenny Quach; Frederic Mentink-Vigier; Ping Wang; Tuo Wang
Journal:  Biochem Soc Trans       Date:  2020-06-30       Impact factor: 5.407

3.  Saccharide analysis of onion outer epidermal walls.

Authors:  Liza A Wilson; Fabien Deligey; Tuo Wang; Daniel J Cosgrove
Journal:  Biotechnol Biofuels       Date:  2021-03-15       Impact factor: 6.040

4.  Solid-state NMR of unlabeled plant cell walls: high-resolution structural analysis without isotopic enrichment.

Authors:  Wancheng Zhao; Alex Kirui; Fabien Deligey; Frederic Mentink-Vigier; Yihua Zhou; Baocai Zhang; Tuo Wang
Journal:  Biotechnol Biofuels       Date:  2021-01-07       Impact factor: 6.040

5.  Carbohydrate-aromatic interface and molecular architecture of lignocellulose.

Authors:  Alex Kirui; Wancheng Zhao; Fabien Deligey; Hui Yang; Xue Kang; Frederic Mentink-Vigier; Tuo Wang
Journal:  Nat Commun       Date:  2022-01-27       Impact factor: 17.694

6.  A molecular vision of fungal cell wall organization by functional genomics and solid-state NMR.

Authors:  Arnab Chakraborty; Liyanage D Fernando; Wenxia Fang; Malitha C Dickwella Widanage; Pingzhen Wei; Cheng Jin; Thierry Fontaine; Jean-Paul Latgé; Tuo Wang
Journal:  Nat Commun       Date:  2021-11-03       Impact factor: 14.919

7.  Identification and Quantification of Glycans in Whole Cells: Architecture of Microalgal Polysaccharides Described by Solid-State Nuclear Magnetic Resonance.

Authors:  Alexandre Poulhazan; Malitha C Dickwella Widanage; Artur Muszyński; Alexandre A Arnold; Dror E Warschawski; Parastoo Azadi; Isabelle Marcotte; Tuo Wang
Journal:  J Am Chem Soc       Date:  2021-11-04       Impact factor: 15.419

8.  Polysaccharide Based Polymers Produced by Scabby Cankered Cactus Pear (Opuntia ficus-indica L.) Infected by Neofusicoccum batangarum: Composition, Structure, and Chemico-Physical Properties.

Authors:  Gabriella Santagata; Alessio Cimmino; Giovanni Dal Poggetto; Domenico Zannini; Marco Masi; Alessandro Emendato; Giuseppe Surico; Antonio Evidente
Journal:  Biomolecules       Date:  2022-01-06
  8 in total

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