| Literature DB >> 32121469 |
Abd El-Galil E Amr1,2, Randa E Abdel Mageid3, Mohamed El-Naggar4, Ahmed M Naglah1,5, Eman S Nossier6, Elsayed A Elsayed7,8.
Abstract
A series of branched tetrapeptide Schiff bases 3-6 were desiEntities:
Keywords: LDHA; Schiff bases; amino acids; anticancer evaluation; molecular docking; p53 ubiquitination; tetrapeptides
Mesh:
Substances:
Year: 2020 PMID: 32121469 PMCID: PMC7179198 DOI: 10.3390/molecules25051096
Source DB: PubMed Journal: Molecules ISSN: 1420-3049 Impact factor: 4.411
Figure 1Design of new target derivatives 3–6 via lead modification of known candidates A–C having promising cytotoxic and LDHA inhibitory activities.
Scheme 1Synthetic routes for compounds 3a–d, 4a–c, 5a–e, and 6a,b.
Figure 2In vitro cytotoxic activities of the tested compounds 4–6 against MCF-7 and MCF-10A cell lines.
Figure 3Decreased percentage ofin vivotumor growth in response to different compound treatments.
Figure 4In vitro and in vivop53 ubiquitination of the newly synthesized compounds.
Figure 5In vitro kinase inhibition activity of the tested compounds 4–6 against human lactate dehydrogenase-A.
Molecular docking data of the synthesized compounds 4–6 in comparison with GNE-140 within the active site of LDHA kinase using MOE software version 2008.10.
| Compd. NO. | Docking Score | Amino Acid Residues | Atoms of Compound | Type of bond |
|---|---|---|---|---|
| GNE-140 | −9.73 | Asn137(2.75); | O(OH); | H- acc |
| 4a | −14.22 | Asn137(2.54); | O(CONH); | H- acc |
| 4b | −13.62 | Asn137(2.68); | O(CONH); | H- acc |
| 4c | −11.29 | Asn137(2.77); | O(CONH); | H- acc |
| 5a | −13.01 | Arg98; | C6H5-4-CH3; | Arene-cation |
| 5b | −12.78 | Arg168; | C6H5-4-OCH3; | Arene-cation |
| 5c | −15.60 | Arg98; | C6H5-4-Cl; | Arene-cation |
| 5d | −11.89 | Arg98; | C6H5-4-Br; | Arene-cation |
| 5e | −11.37 | Arg168; | C6H5-4-NO2; | Arene-cation |
| 6a | −12.06 | Asn137(2.88); | O(CONH); | H- acc |
| 6b | −12.88 | Asn137(2.35); | O(CONH); | H- acc |
Figure 6Two-dimensional (A) and 3D (B) patternsillustrating the proposed binding mode of the co-crystallized ligand GNE-140 in the LDHA binding pocket (PDB code: 4ZVV). Hydrogen bonding interactions with the protein are shown as dashed lines. Green color reflects a hydrophobic area, pink color reflects a high polar area, and blue color reflects a mild polar area.
Figure 7Two-dimensional (A) and 3D (B) patternsillustrating the proposed binding mode of the compound 4a in the LDHA binding pocket (PDB code: 4ZVV). Hydrogen bonding interactions with the protein are shown as dashed lines. Green color reflects a hydrophobic area, pink color reflects a high polar area, and blue color reflects a mild polar area.
Figure 8Two-dimensional (A) and 3D (B) patternsillustrating the proposed binding mode of the compound 5c in the LDHA binding pocket (PDB code: 4ZVV). Hydrogen bonding interactions with the protein are shown as dashed lines. Green color reflects a hydrophobic area, pink color reflects a high polar area, and blue color reflects a mild polar area.