Literature DB >> 32111619

PAX1 is essential for development and function of the human thymus.

Yasuhiro Yamazaki1, Raul Urrutia2, Luis M Franco3, Silvia Giliani4,5, Kejian Zhang6,7, Anas M Alazami8,9, A Kerry Dobbs1, Stefania Masneri4,5, Avni Joshi10, Francisco Otaizo-Carrasquero11, Timothy G Myers11, Sundar Ganesan12, Maria Pia Bondioni13, Mai Lan Ho14, Catherine Marks14, Huda Alajlan8, Reem W Mohammed15, Fanggeng Zou7,16, C Alexander Valencia7,17,18,19, Alexandra H Filipovich20, Fabio Facchetti4, Bertrand Boisson21,22,23, Chiara Azzari24,25, Bander K Al-Saud15,26, Hamoud Al-Mousa15,26, Jean Laurent Casanova21,22,23,27,28, Roshini S Abraham29,30, Luigi D Notarangelo31.   

Abstract

We investigated the molecular and cellular basis of severe combined immunodeficiency (SCID) in six patients with otofaciocervical syndrome type 2 who failed to attain T cell reconstitution after allogeneic hematopoietic stem cell transplantation, despite successful engraftment in three of them. We identified rare biallelic PAX1 rare variants in all patients. We demonstrated that these mutant PAX1 proteins have an altered conformation and flexibility of the paired box domain and reduced transcriptional activity. We generated patient-derived induced pluripotent stem cells and differentiated them into thymic epithelial progenitor cells and found that they have an altered transcriptional profile, including for genes involved in the development of the thymus and other tissues derived from pharyngeal pouches. These results identify biallelic, loss-of-function PAX1 mutations as the cause of a syndromic form of SCID due to altered thymus development.
Copyright © 2020 The Authors, some rights reserved; exclusive licensee American Association for the Advancement of Science. No claim to original U.S. Government Works.

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Year:  2020        PMID: 32111619      PMCID: PMC7189207          DOI: 10.1126/sciimmunol.aax1036

Source DB:  PubMed          Journal:  Sci Immunol        ISSN: 2470-9468


  46 in total

1.  Crystal structure of the human Pax6 paired domain-DNA complex reveals specific roles for the linker region and carboxy-terminal subdomain in DNA binding.

Authors:  H E Xu; M A Rould; W Xu; J A Epstein; R L Maas; C O Pabo
Journal:  Genes Dev       Date:  1999-05-15       Impact factor: 11.361

2.  p63 Is essential for the proliferative potential of stem cells in stratified epithelia.

Authors:  Makoto Senoo; Filipa Pinto; Christopher P Crum; Frank McKeon
Journal:  Cell       Date:  2007-05-04       Impact factor: 41.582

3.  featureCounts: an efficient general purpose program for assigning sequence reads to genomic features.

Authors:  Yang Liao; Gordon K Smyth; Wei Shi
Journal:  Bioinformatics       Date:  2013-11-13       Impact factor: 6.937

4.  A novel PAX1 null homozygous mutation in autosomal recessive otofaciocervical syndrome associated with severe combined immunodeficiency.

Authors:  I Paganini; R Sestini; G L Capone; A L Putignano; E Contini; I Giotti; F Gensini; A Marozza; A Barilaro; B Porfirio; L Papi
Journal:  Clin Genet       Date:  2017-10-24       Impact factor: 4.438

5.  A hypofunctional PAX1 mutation causes autosomal recessively inherited otofaciocervical syndrome.

Authors:  Esther Pohl; Ayca Aykut; Filippo Beleggia; Emin Karaca; Burak Durmaz; Katharina Keupp; Esra Arslan; Melis Palamar; Melis Palamar Onay; Gökhan Yigit; Ferda Özkinay; Bernd Wollnik
Journal:  Hum Genet       Date:  2013-07-13       Impact factor: 4.132

6.  Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles.

Authors:  Aravind Subramanian; Pablo Tamayo; Vamsi K Mootha; Sayan Mukherjee; Benjamin L Ebert; Michael A Gillette; Amanda Paulovich; Scott L Pomeroy; Todd R Golub; Eric S Lander; Jill P Mesirov
Journal:  Proc Natl Acad Sci U S A       Date:  2005-09-30       Impact factor: 11.205

7.  MEDELLER: homology-based coordinate generation for membrane proteins.

Authors:  Sebastian Kelm; Jiye Shi; Charlotte M Deane
Journal:  Bioinformatics       Date:  2010-10-05       Impact factor: 6.937

8.  Generation of Pax1/PAX1-Specific Monoclonal Antibodies.

Authors:  Regina Feederle; Josef-Karl Gerber; Amy Middleton; Emily Northrup; Ralf Kist; Elisabeth Kremmer; Heiko Peters
Journal:  Monoclon Antib Immunodiagn Immunother       Date:  2016-10-05

9.  Evidence supporting a critical contribution of intrinsically disordered regions to the biochemical behavior of full-length human HP1γ.

Authors:  Gabriel Velez; Marisa Lin; Trace Christensen; William A Faubion; Gwen Lomberk; Raul Urrutia
Journal:  J Mol Model       Date:  2015-12-17       Impact factor: 1.810

10.  Dynamics of thymus organogenesis and colonization in early human development.

Authors:  Alison M Farley; Lucy X Morris; Eric Vroegindeweij; Marianne L G Depreter; Harsh Vaidya; Frances H Stenhouse; Simon R Tomlinson; Richard A Anderson; Tom Cupedo; Jan J Cornelissen; C Clare Blackburn
Journal:  Development       Date:  2013-05       Impact factor: 6.868

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  21 in total

Review 1.  Stem cell-based multi-tissue platforms to model human autoimmune diabetes.

Authors:  Karla F Leavens; Juan R Alvarez-Dominguez; Linda T Vo; Holger A Russ; Audrey V Parent
Journal:  Mol Metab       Date:  2022-10-06       Impact factor: 8.568

Review 2.  Thymus Functionality Needs More Than a Few TECs.

Authors:  Pratibha Bhalla; Dong-Ming Su; Nicolai S C van Oers
Journal:  Front Immunol       Date:  2022-06-10       Impact factor: 8.786

3.  Human Inborn Errors of Immunity: 2022 Update on the Classification from the International Union of Immunological Societies Expert Committee.

Authors:  Stuart G Tangye; Waleed Al-Herz; Aziz Bousfiha; Charlotte Cunningham-Rundles; Jose Luis Franco; Steven M Holland; Christoph Klein; Tomohiro Morio; Eric Oksenhendler; Capucine Picard; Anne Puel; Jennifer Puck; Mikko R J Seppänen; Raz Somech; Helen C Su; Kathleen E Sullivan; Troy R Torgerson; Isabelle Meyts
Journal:  J Clin Immunol       Date:  2022-06-24       Impact factor: 8.542

Review 4.  Congenital Athymia: Genetic Etiologies, Clinical Manifestations, Diagnosis, and Treatment.

Authors:  Cathleen Collins; Emily Sharpe; Abigail Silber; Sarah Kulke; Elena W Y Hsieh
Journal:  J Clin Immunol       Date:  2021-05-13       Impact factor: 8.317

5.  Updates on new monogenic inborn errors of immunity.

Authors:  Riccardo Castagnoli; Luigi Daniele Notarangelo
Journal:  Pediatr Allergy Immunol       Date:  2020-11       Impact factor: 5.464

Review 6.  When Screening for Severe Combined Immunodeficiency (SCID) with T Cell Receptor Excision Circles Is Not SCID: a Case-Based Review.

Authors:  David Buchbinder; Jolan E Walter; Manish J Butte; Wan-Yin Chan; Maria Chitty Lopez; Victoria R Dimitriades; Morna J Dorsey; Diane J Nugent; Jennifer M Puck; Jasjit Singh; Cathleen A Collins
Journal:  J Clin Immunol       Date:  2021-01-07       Impact factor: 8.542

Review 7.  Human inborn errors of immunity: An expanding universe.

Authors:  Luigi D Notarangelo; Rosa Bacchetta; Jean-Laurent Casanova; Helen C Su
Journal:  Sci Immunol       Date:  2020-07-10

Review 8.  Lethal Infectious Diseases as Inborn Errors of Immunity: Toward a Synthesis of the Germ and Genetic Theories.

Authors:  Jean-Laurent Casanova; Laurent Abel
Journal:  Annu Rev Pathol       Date:  2020-04-14       Impact factor: 23.472

9.  Generation of functional human thymic cells from induced pluripotent stem cells.

Authors:  Stephan A Ramos; John J Morton; Prabha Yadav; Brendan Reed; Sheila I Alizadeh; Ali H Shilleh; Loni Perrenoud; James Jaggers; John Kappler; Antonio Jimeno; Holger A Russ
Journal:  J Allergy Clin Immunol       Date:  2021-07-29       Impact factor: 10.793

10.  Experience with cultured thymus tissue in 105 children.

Authors:  M Louise Markert; Stephanie E Gupton; Elizabeth A McCarthy
Journal:  J Allergy Clin Immunol       Date:  2021-08-04       Impact factor: 14.290

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