Literature DB >> 32106218

Mutational signature in colorectal cancer caused by genotoxic pks+ E. coli.

Cayetano Pleguezuelos-Manzano1,2, Jens Puschhof1,2, Axel Rosendahl Huber2,3, Arne van Hoeck2,4, Henry M Wood5, Jason Nomburg6,7,8, Carino Gurjao7,8, Freek Manders2,3, Guillaume Dalmasso9, Paul B Stege10, Fernanda L Paganelli10, Maarten H Geurts1,2, Joep Beumer1, Tomohiro Mizutani1,2, Yi Miao11,12,13, Reinier van der Linden1, Stefan van der Elst1, K Christopher Garcia11,12,13, Janetta Top10, Rob J L Willems10, Marios Giannakis7,8, Richard Bonnet9,14, Phil Quirke5, Matthew Meyerson7,8,15,16, Edwin Cuppen2,4,17,18, Ruben van Boxtel19,20, Hans Clevers21,22,23.   

Abstract

Various species of the intestinal microbiota have been associated with the development of colorectal cancer1,2, but it has not been demonstrated that bacteria have a direct role in the occurrence of oncogenic mutations. Escherichia coli can carry the pathogenicity island pks, which encodes a set of enzymes that synthesize colibactin3. This compound is believed to alkylate DNA on adenine residues4,5 and induces double-strand breaks in cultured cells3. Here we expose human intestinal organoids to genotoxic pks+ E. coli by repeated luminal injection over five months. Whole-genome sequencing of clonal organoids before and after this exposure revealed a distinct mutational signature that was absent from organoids injected with isogenic pks-mutant bacteria. The same mutational signature was detected in a subset of 5,876 human cancer genomes from two independent cohorts, predominantly in colorectal cancer. Our study describes a distinct mutational signature in colorectal cancer and implies that the underlying mutational process results directly from past exposure to bacteria carrying the colibactin-producing pks pathogenicity island.

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Year:  2020        PMID: 32106218      PMCID: PMC8142898          DOI: 10.1038/s41586-020-2080-8

Source DB:  PubMed          Journal:  Nature        ISSN: 0028-0836            Impact factor:   49.962


  41 in total

1.  Isaac: ultra-fast whole-genome secondary analysis on Illumina sequencing platforms.

Authors:  Come Raczy; Roman Petrovski; Christopher T Saunders; Ilya Chorny; Semyon Kruglyak; Elliott H Margulies; Han-Yu Chuang; Morten Källberg; Swathi A Kumar; Arnold Liao; Kristina M Little; Michael P Strömberg; Stephen W Tanner
Journal:  Bioinformatics       Date:  2013-06-04       Impact factor: 6.937

2.  Bacterial genotoxin colibactin promotes colon tumour growth by inducing a senescence-associated secretory phenotype.

Authors:  Antony Cougnoux; Guillaume Dalmasso; Ruben Martinez; Emmanuel Buc; Julien Delmas; Lucie Gibold; Pierre Sauvanet; Claude Darcha; Pierre Déchelotte; Mathilde Bonnet; Denis Pezet; Harald Wodrich; Arlette Darfeuille-Michaud; Richard Bonnet
Journal:  Gut       Date:  2014-03-21       Impact factor: 23.059

Review 3.  Urinary Tract Infection: Pathogenesis and Outlook.

Authors:  Lisa K McLellan; David A Hunstad
Journal:  Trends Mol Med       Date:  2016-09-28       Impact factor: 11.951

4.  In vitro expansion of human gastric epithelial stem cells and their responses to bacterial infection.

Authors:  Sina Bartfeld; Tülay Bayram; Marc van de Wetering; Meritxell Huch; Harry Begthel; Pekka Kujala; Robert Vries; Peter J Peters; Hans Clevers
Journal:  Gastroenterology       Date:  2014-10-13       Impact factor: 22.682

Review 5.  A Review of Research Conducted with Probiotic E. coli Marketed as Symbioflor.

Authors:  Claudia Beimfohr
Journal:  Int J Bacteriol       Date:  2016-11-22

6.  Modelling Cryptosporidium infection in human small intestinal and lung organoids.

Authors:  Inha Heo; Devanjali Dutta; Deborah A Schaefer; Nino Iakobachvili; Benedetta Artegiani; Norman Sachs; Kim E Boonekamp; Gregory Bowden; Antoni P A Hendrickx; Robert J L Willems; Peter J Peters; Michael W Riggs; Roberta O'Connor; Hans Clevers
Journal:  Nat Microbiol       Date:  2018-06-25       Impact factor: 17.745

7.  Tissue-specific mutation accumulation in human adult stem cells during life.

Authors:  Francis Blokzijl; Joep de Ligt; Myrthe Jager; Valentina Sasselli; Sophie Roerink; Nobuo Sasaki; Meritxell Huch; Sander Boymans; Ewart Kuijk; Pjotr Prins; Isaac J Nijman; Inigo Martincorena; Michal Mokry; Caroline L Wiegerinck; Sabine Middendorp; Toshiro Sato; Gerald Schwank; Edward E S Nieuwenhuis; Monique M A Verstegen; Luc J W van der Laan; Jeroen de Jonge; Jan N M IJzermans; Robert G Vries; Marc van de Wetering; Michael R Stratton; Hans Clevers; Edwin Cuppen; Ruben van Boxtel
Journal:  Nature       Date:  2016-10-03       Impact factor: 49.962

8.  High prevalence of mucosa-associated E. coli producing cyclomodulin and genotoxin in colon cancer.

Authors:  Emmanuel Buc; Damien Dubois; Pierre Sauvanet; Jennifer Raisch; Julien Delmas; Arlette Darfeuille-Michaud; Denis Pezet; Richard Bonnet
Journal:  PLoS One       Date:  2013-02-14       Impact factor: 3.240

9.  Signatures of mutational processes in human cancer.

Authors:  Ludmil B Alexandrov; Serena Nik-Zainal; David C Wedge; Samuel A J R Aparicio; Sam Behjati; Andrew V Biankin; Graham R Bignell; Niccolò Bolli; Ake Borg; Anne-Lise Børresen-Dale; Sandrine Boyault; Birgit Burkhardt; Adam P Butler; Carlos Caldas; Helen R Davies; Christine Desmedt; Roland Eils; Jórunn Erla Eyfjörd; John A Foekens; Mel Greaves; Fumie Hosoda; Barbara Hutter; Tomislav Ilicic; Sandrine Imbeaud; Marcin Imielinski; Marcin Imielinsk; Natalie Jäger; David T W Jones; David Jones; Stian Knappskog; Marcel Kool; Sunil R Lakhani; Carlos López-Otín; Sancha Martin; Nikhil C Munshi; Hiromi Nakamura; Paul A Northcott; Marina Pajic; Elli Papaemmanuil; Angelo Paradiso; John V Pearson; Xose S Puente; Keiran Raine; Manasa Ramakrishna; Andrea L Richardson; Julia Richter; Philip Rosenstiel; Matthias Schlesner; Ton N Schumacher; Paul N Span; Jon W Teague; Yasushi Totoki; Andrew N J Tutt; Rafael Valdés-Mas; Marit M van Buuren; Laura van 't Veer; Anne Vincent-Salomon; Nicola Waddell; Lucy R Yates; Jessica Zucman-Rossi; P Andrew Futreal; Ultan McDermott; Peter Lichter; Matthew Meyerson; Sean M Grimmond; Reiner Siebert; Elías Campo; Tatsuhiro Shibata; Stefan M Pfister; Peter J Campbell; Michael R Stratton
Journal:  Nature       Date:  2013-08-14       Impact factor: 49.962

10.  Somatic Mutations Reveal Lineage Relationships and Age-Related Mutagenesis in Human Hematopoiesis.

Authors:  Fernando G Osorio; Axel Rosendahl Huber; Rurika Oka; Mark Verheul; Sachin H Patel; Karlijn Hasaart; Lisanne de la Fonteijne; Ignacio Varela; Fernando D Camargo; Ruben van Boxtel
Journal:  Cell Rep       Date:  2018-11-27       Impact factor: 9.423

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  183 in total

Review 1.  Structure and bioactivity of colibactin.

Authors:  Kevin M Wernke; Mengzhao Xue; Alina Tirla; Chung Sub Kim; Jason M Crawford; Seth B Herzon
Journal:  Bioorg Med Chem Lett       Date:  2020-05-23       Impact factor: 2.823

2.  Leaving your mark.

Authors:  Anna Dart
Journal:  Nat Rev Cancer       Date:  2020-05       Impact factor: 60.716

Review 3.  Employing chemical synthesis to study the structure and function of colibactin, a "dark matter" metabolite.

Authors:  Peyton C Williams; Kevin M Wernke; Alina Tirla; Seth B Herzon
Journal:  Nat Prod Rep       Date:  2020-11-18       Impact factor: 13.423

4.  Microbiota and colorectal cancer: colibactin makes its mark.

Authors:  Janelle C Arthur
Journal:  Nat Rev Gastroenterol Hepatol       Date:  2020-06       Impact factor: 46.802

5.  Escherichia coli K12 Upregulates Programmed Cell Death Ligand 1 (PD-L1) Expression in Gamma Interferon-Sensitized Intestinal Epithelial Cells via the NF-κB Pathway.

Authors:  Seul A Lee; Yiming Wang; Fang Liu; Stephen M Riordan; Lu Liu; Li Zhang
Journal:  Infect Immun       Date:  2020-12-15       Impact factor: 3.441

Review 6.  Clonal expansion in non-cancer tissues.

Authors:  Nobuyuki Kakiuchi; Seishi Ogawa
Journal:  Nat Rev Cancer       Date:  2021-02-24       Impact factor: 60.716

7.  Genotoxic Effect of Salmonella Paratyphi A Infection on Human Primary Gallbladder Cells.

Authors:  Ludovico P Sepe; Kimberly Hartl; Amina Iftekhar; Hilmar Berger; Naveen Kumar; Christian Goosmann; Sascha Chopra; Sven Christian Schmidt; Rajendra Kumar Gurumurthy; Thomas F Meyer; Francesco Boccellato
Journal:  mBio       Date:  2020-09-22       Impact factor: 7.867

8.  Alterations in the Duodenal Fluid Microbiome of Patients With Pancreatic Cancer.

Authors:  Shiro Kohi; Anne Macgregor-Das; Mohamad Dbouk; Takeichi Yoshida; Miguel Chuidian; Toshiya Abe; Michael Borges; Anne Marie Lennon; Eun Ji Shin; Marcia Irene Canto; Michael Goggins
Journal:  Clin Gastroenterol Hepatol       Date:  2020-11-05       Impact factor: 11.382

Review 9.  The microbiome and human cancer.

Authors:  Gregory D Sepich-Poore; Laurence Zitvogel; Ravid Straussman; Jeff Hasty; Jennifer A Wargo; Rob Knight
Journal:  Science       Date:  2021-03-26       Impact factor: 47.728

Review 10.  Rising incidence of early-onset colorectal cancer - a call to action.

Authors:  Naohiko Akimoto; Tomotaka Ugai; Rong Zhong; Tsuyoshi Hamada; Kenji Fujiyoshi; Marios Giannakis; Kana Wu; Yin Cao; Kimmie Ng; Shuji Ogino
Journal:  Nat Rev Clin Oncol       Date:  2020-11-20       Impact factor: 66.675

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