Literature DB >> 32104951

Structure-Activity Relationships for the Affinity of Chaotropic Polyoxometalate Anions towards Proteins.

Albert Solé-Daura1, Josep M Poblet1, Jorge J Carbó1.   

Abstract

The influence of the composition of chaotropic polyoxometalate (POM) anions on their affinity to biological systems was studied by means of atomistic molecular dynamics (MD) simulations. The variations in the affinity to hen egg-white lysozyme (HEWL) were analyzed along two series of POMs whereby the charge or the size and shape of the metal cluster are modified systematically. Our simulations revealed a quadratic relationship between the charge of the POM and its affinity to HEWL as a consequence of the parabolic growth of POM⋅⋅⋅water interaction with the charge. As the charge increases, POMs become less chaotropic (more kosmotropic) increasing the number and the strength of POM-water hydrogen bonds and structuring the solvation shell around the POM. This atomistic description explains the proportionally larger desolvation energies and less protein affinity for highly charged POMs, and consequently, the preference for moderate charge densities (q/M=0.33). Also, our simulations suggest that POM⋅⋅⋅protein interactions are size-specific. The cationic pockets of HEWL protein show a preference for Keggin-like structures, which display the optimal dimensions (≈1 nm). Finally, we developed a quantitative multidimensional model for protein affinity with predictive ability (r2 =0.97; q2 =0.88) using two molecular descriptors that account for the charge density (charge per metal atom ratio; q/M) and the size and shape (shape weighted-volume; VS ).
© 2020 Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim.

Entities:  

Keywords:  chaotropic anions; molecular dynamics; polyoxometalates; protein interactions; structure-activity relationships

Year:  2020        PMID: 32104951     DOI: 10.1002/chem.201905533

Source DB:  PubMed          Journal:  Chemistry        ISSN: 0947-6539            Impact factor:   5.236


  5 in total

1.  Aluminum-Substituted Keggin Germanotungstate [HAl(H2O)GeW11O39]4-: Synthesis, Characterization, and Antibacterial Activity.

Authors:  Elias Tanuhadi; Nadiia I Gumerova; Alexander Prado-Roller; Mathea Sophia Galanski; Hana Čipčić-Paljetak; Donatella Verbanac; Annette Rompel
Journal:  Inorg Chem       Date:  2020-12-17       Impact factor: 5.165

2.  Rationalizing the Decavanadate(V) and Oxidovanadium(IV) Binding to G-Actin and the Competition with Decaniobate(V) and ATP.

Authors:  Giuseppe Sciortino; Manuel Aureliano; Eugenio Garribba
Journal:  Inorg Chem       Date:  2020-11-30       Impact factor: 5.165

Review 3.  Computational Modelling of the Interactions Between Polyoxometalates and Biological Systems.

Authors:  Adrià Gil; Jorge J Carbó
Journal:  Front Chem       Date:  2022-04-14       Impact factor: 5.545

4.  Wells-Dawson phosphotungstates as mushroom tyrosinase inhibitors: a speciation study.

Authors:  Raphael Lampl; Joscha Breibeck; Nadiia I Gumerova; Mathea Sophia Galanski; Annette Rompel
Journal:  Sci Rep       Date:  2021-09-29       Impact factor: 4.379

5.  Speciation of Transition-Metal-Substituted Keggin-Type Silicotungstates Affected by the Co-crystallization Conditions with Proteinase K.

Authors:  Joscha Breibeck; Elias Tanuhadi; Nadiia I Gumerova; Gerald Giester; Alexander Prado-Roller; Annette Rompel
Journal:  Inorg Chem       Date:  2021-09-16       Impact factor: 5.165

  5 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.