| Literature DB >> 32103868 |
Ian Thornhill1, Lesley Batty1, Russell G Death2, Nikolai R Friberg3,4, Mark E Ledger1.
Abstract
Urbanisation represents a growing threat to natural communities across the globe. Small aquatic habitats such as ponds are especially vulnerable and are often poorly protected by legislation. Many ponds are threatened by development and pollution from the surrounding landscape, yet their biodiversity and conservation value remain poorly described. Here we report the results of a survey of 30 ponds along an urban land-use gradient in the West Midlands, UK. We outline the environmental conditions of these urban ponds to identify which local and landscape scale environmental variables determine the biodiversity and conservation value of the macroinvertebrate assemblages in the ponds. Cluster analysis identified four groups of ponds with contrasting macroinvertebrate assemblages reflecting differences in macrophyte cover, nutrient status, riparian shading, the nature of the pond edge, surrounding land-use and the availability of other wetland habitats. Pond conservation status varied markedly across the sites. The richest macroinvertebrate assemblages with high conservation value were found in ponds with complex macrophyte stands and floating vegetation with low nutrient concentrations and little surrounding urban land. The most impoverished assemblages were found in highly urban ponds with hard-engineered edges, heavy shading and nutrient rich waters. A random forest classification model revealed that local factors usually had primacy over landscape scale factors in determining pond conservation value, and constitute a priority focus for management.Entities:
Keywords: Aquatic ecology; Biodiversity; Machine learning; Urbanisation; Water quality
Year: 2017 PMID: 32103868 PMCID: PMC7010385 DOI: 10.1007/s10531-016-1286-4
Source DB: PubMed Journal: Biodivers Conserv ISSN: 0960-3115 Impact factor: 3.549
Fig. 1Geographic location of 30 study ponds (circles) in the West Midland conurbation, UK Sites are shown in relation to land-use within 1 km squares, using the classification of Owen et al. (2006). Pond types were established using a Ward’s hierarchical clustering procedure
Land-use variables used within a concentric ring analysis and connectivity metrics, their sources and ranges generated from a combination of spatial layers within a GIS
| Variable | Source (s) | Mean (max.–min.) |
|---|---|---|
| Land-use (50–2500 m) | ||
| Impermeable surfaces | OS MasterMap | 17.7 (0.00–31.0) |
| Improved grassland | Land Cover Map (2007) | 17.8 (0.00–59.3) |
| Scrub (<3 m) | NDVI + photogrammetry | 20.3 (10.2–44.8) |
| Trees (>3 m) | NDVI + photogrammetry | 20.6 (4.8–52.2) |
| Connectivity (at 500 m) | ||
| Number of ponds | OS MasterMap + aerial imagery | 1.93 (0.0–4.0) |
| Coverage of aquatic habitat | OS MasterMap | 13.2 (2.5–31.5) |
| Coverage of pond habitat | OS MasterMap + aerial imagery | 5.5 (0.0–17.9) |
Out-of-bag (OOB) error estimates for landscape-scale models incorporating concentric ring analysis of land-use factors and a global model combining local with landscape-scale (100 m) factors for predicting classification of four pond types
| Model | Formula | Important variables (MDA >0) | OOB (%) |
|---|---|---|---|
| Landscape 50 m | ~IS + IG + Scrub + Tree | Scrub (5.88), Tree (5.18), IS (5.07) | 66.7 |
| 100 m | IS (9.80), Scrub (4.08), Tree (3.10) | 53.3 | |
| 250 m | IS (9.97), Scrub (8.09), IG (0.05) | 63.3 | |
| 500 m | IS (9.78), Scrub (6.30), Tree (4.10), IG (2.62) | 63.3 | |
| 1000 m | n/a | 86.7 | |
| 2500 m | Tree (5.09), Scrub (3.56), IS (3.37) | 63.3 | |
| Global | ~Pond.500 m + IS.100 m + Scrub.100 m + Concrete + Shading + Fringing + Floating + Mphyte + WLFI + K + NH4 + Chl- | Mphyte (6.45), IS.100 m (4.10), Shading (3.82), K (2.70), Floating (2.51), Scrub.100 m (1.93), Concrete (1.58), Pond.500 m (1.33) Chl- | 36.7 |
IS impermeable surface, IG improved grassland, Scrub vegetation between 0 and 3 m, Tree Tree canopy cover (over 3 m)
Non-native macrophyte and macroinvertebrate species found in each pond type
| Order | Family | Species | Type 1 | Type 2 | Type 3 | Type 4 |
|---|---|---|---|---|---|---|
| Invertebrates | ||||||
| Amphipoda | Crangonyctidae |
| 10 (100) | 5 (72) | 7 (100) | 5 (83) |
| Gastropoda | Hydrobiidae |
| 7 (70) | 3 (43) | 1 (14) | 1 (17) |
| Gastropoda | Planariidae |
| 0 (0) | 0 (0) | 1 (14) | 0 (0) |
| Macrophytes | ||||||
| Saxifragales | Crassulaceae |
| 3 (30) | 0 (0) | 0 (0) | 0 (0) |
| Apiales | Apiaceae |
| 1 (10) | 0 (0) | 0 (0) | 0 (0) |
| Alismatales | Hydrocharitaceae |
| 4 (40) | 0 (0) | 2 (29) | 0 (0) |
| Alismatales | Hydrocharitaceae |
| 2 (20) | 0 (0) | 0 (0) | 0 (0) |
| Alismatales | Hydrocharitaceae |
| 1 (10) | 0 (0) | 1 (14) | 0 (0) |
| Saxifragales | Haloragaceae |
| 0 (0) | 0 (0) | 0 (0) | 1 (17) |
| Salviniales | Azollaceae |
| 0 (0) | 0 (0) | 1 (14) | 0 (0) |
The number (and percentage) of sites that supported the species within each pond type are reported
Taxa that most characterised the macroinvertebrate assemblages of pond types as identified but indicator value (IndVal) analysis
| Pond type | No. of sites | Top indicator taxa with indicator value (IV), P = < 0.05 | Total indicators |
|---|---|---|---|
| 1 | 10 |
| 40 |
| 2 | 7 | None identified | 0 |
| 3 | 7 |
| 4 |
| 4 | 6 |
| 7 |
Mean ± 1SD (min–max) values of physicochemical and land-use variables within clustered pond types identified as important predictors of group classification
| Type 1 | Type 2 | Type 3 | Type 4 | |
|---|---|---|---|---|
| Local factors | ||||
| Macrophyte taxa | 11.8 ± 4.1 (7–20)a | 1.7 ± 1.7 (0–4)b | 8.6 ± 4.7 (3–15)ac | 3.7 ± 1.8 (1–6)bc |
| Phosphate (mg/L) | 0.1 ± 0.09 (0.0–0.3)a | 1.0 ± 0.76 (0.2–2.1)b | 0.2 ± 0.12 (0.1–0.4)ab | 0.9 ± 0.85 (0.1–2.5)b |
| Shading (%) | 5.9 ± 7.2 (0.0–16.7)a | 40.9 ± 20.0 (19.1–69.3)b | 31.1 ± 38.1 (2.6–95.0)ab | 56.9 ± 34.6 (6.3–100)b |
| Potassium (mg/L) | 4.1 ± 1.5 (1.5–7.7)a | 4.3 ± 0.8 (2.9–5.1)ab | 4.4 ± 2.8 (1.6–9.6)ab | 7.0 ± 2.9 (4.7–12.4)b |
| Floating cover (%) | 11.6 ± 13.9 (0.5–47.2)a | 1.2 ± 1.1 (0.0–3.2)ab | 2.6 ± 6.1 (0.0–16.4)b | 1.3 ± 3.0 (0.0–7.4)b |
| Concrete† | 2.8 ± 8.1 (0.0–25.9)a | 37.1 ± 34.3 (0.0–100)b | 14.6 ± 14.3 (0.0–36.6)ab | 8.5 ± 8.3 (0.0–18.9)ab |
| Chl | 32.4 ± 19.4 (10.2–73.6) | 35.2 ± 28.0 (9.5–74.2) | 72.5 ± 81.1 (4.0–243.7) | 156.9 ± 159.0 (8.4–437.9) |
| Ammonia (mg/L) | 0.2 ± 0.1 (0.0–0.3) | 0.9 ± 1.1 (0.0–2.7) | 0.9 ± 2.1 (0.0–5.7) | 1.5 ± 1.1 (0.1–3.2) |
| Fringing cover (%) | 18.0 ± 15.6 (0.2–37.3) | 7.0 ± 2.5 (3.1–10.1) | 17.1 ± 16.6 (0.0–41.4) | 5.0 ± 6.4 (0–16.1) |
| WLFI* | 99.8 ± 107 (4.1–353.6) | 27.5 ± 21.9 (6.4–69.8) | 1250.1 ± 1995 (12.0–4698) | 64.2 ± 48.6 (20.4–126.9) |
| Landscape factors (% cover) | ||||
| Impermeable surfaces (100 m) | 53.2 ± 7.7 (23.6–82.6)a | 66.6 ± 5.7 (58.5–78.9)b | 68.9 ± 9.8 (48.2–91.7)ab | 66.3 ± 7.8 (43.3–90.2)b |
| Scrub <3 m vegetation (100 m) | 27.0 ± 15.0 (14.4–44.8)a | 16.2 ± 2.6 (11.6–21.0)ab | 19.5 ± 10.6 (10.2–25.4)ab | 15.1 ± 5.4 (10.7–21.2)b |
| Ponds % (500 m) | 9.5 ± 5.2 (2.0–15.2)a | 2.1 ± 2.3 (0.0–6.4)b | 6.1 ± 6.3 (0.0–17.9)ab | 2.6 ± 2.2 (0.0–5.0)ab |
| Water % (500 m) | 20.4 ± 7.4 (9.9–31.5)a | 7.1 ± 3.2 (3.6–12.9)b | 15.1 ± 4.7 (10.2–24.7)ab | 6.1 ± 2.8 (2.5–11.0)b |
Lettering denotes significant differences between pond types (Kruskal–Wallis, post hoc Dunn, P < 0.05 Bonferroni corrected)
*Wetland Level Fluctuation Index–the standard deviation of three measures of water depth at fixed points (measured Spring, Summer and Autumn)
†Percentage of bank formed of hard engineering e.g. concrete
Mean ± 1SD (min–max) Community Conservation Index score, taxa richness, Shannon diversity index and Pielou measure of evenness within each pond type (italicised are values without non-native species) and the total number of taxa, unique taxa (exclusive to that pond type) and rare (see Supplementary material T3) species occurring across each pond type
| Type 1 | Type 2 | Type 3 | Type 4 | |
|---|---|---|---|---|
| CCIa | 16.9 ± 3.6 (11.1–26.4) | 8.9 ± 5.4 (4.6–19.8) | 10.3 ± 0.87 (8.8–11.3) | 8.8 ± 5.4 (1.4–17.0) |
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| Taxon richness | 69 ± 10.6 (54–87) | 23 ± 9.3 (14–39) | 47 ± 9.27 (32–59) | 37 ± 11.3 (18–51) |
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| Shannon | 2.59 ± 0.39 (1.82–3.02) | 1.39 ± 0.54 (0.60–2.33) | 1.87 ± 0.55 (1.15–2.60) | 1.73 ± 0.27 (1.53–2.25) |
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| Pielou | 0.61 ± 0.09 (0.44–0.67) | 0.45 ± 0.15 (0.23–0.67) | 0.49 ± 0.14 (0.31–0.67) | 0.49 ± 0.05 (0.44–0.57) |
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| Total unique taxa | 55 | 3 | 9 | 3 |
| Total rare species | 6 | 2 | 2 | 2 |
| Total taxon richness | 167 | 73 | 122 | 89 |
aCommunity Conservation Index (after Chadd and Extence 2004)
Fig. 3Influential local and landscape-scale variables used by a global random forest model to predict pond type membership broken down into pond types, a Type 1, b Type 2, c Type 3 and d Type 4. The greater the value of the mean decrease in accuracy (MDA) statistic the more relevant the variable is for classification into the pond type
Fig. 2Influential local and landscape-scale variables used by a global random forest model to predict pond type membership. The greater the value of the mean decrease in accuracy (MDA) statistic the greater the loss of model predictive accuracy when that variable is excluded (or permuted) from decision trees