Literature DB >> 32102777

The 2019 novel coronavirus resource.

Wen-Ming Zhao1, Shu-Hui Song2, Mei-Li Chen2, Dong Zou2, Li-Na Ma2, Ying-Ke Ma2, Ru-Jiao Li2, Li-Li Hao2, Cui-Ping Li2, Dong-Mei Tian2, Bi-Xia Tang2, Yan-Qing Wang2, Jun-Wei Zhu2, Huan-Xin Chen2, Zhang Zhang1, Yong-Biao Xue3, Yi-Ming Bao1.   

Abstract

An ongoing outbreak of a novel coronavirus infection in Wuhan, China since December 2019 has led to 31,516 infected persons and 638 deaths across 25 countries (till 16:00 on February 7, 2020). The virus causing this pneumonia was then named as the 2019 novel coronavirus (2019-nCoV) by the World Health Organization. To promote the data sharing and make all relevant information of 2019-nCoV publicly available, we construct the 2019 Novel Coronavirus Resource (2019nCoVR, https://bigd.big.ac.cn/ncov). 2019nCoVR features comprehensive integration of genomic and proteomic sequences as well as their metadata information from the Global Initiative on Sharing All Influenza Data, National Center for Biotechnology Information, China National GeneBank, National Microbiology Data Center and China National Center for Bioinformation (CNCB)/National Genomics Data Center (NGDC). It also incorporates a wide range of relevant information including scientific literatures, news, and popular articles for science dissemination, and provides visualization functionalities for genome variation analysis results based on all collected 2019-nCoV strains. Moreover, by linking seamlessly with related databases in CNCB/NGDC, 2019nCoVR offers virus data submission and sharing services for raw sequence reads and assembled sequences. In this report, we provide comprehensive descriptions on data deposition, management, release and utility in 2019nCoVR, laying important foundations in aid of studies on virus classification and origin, genome variation and evolution, fast detection, drug development and pneumonia precision prevention and therapy.

Entities:  

Keywords:  2019 novel coronavirus; 2019nCoVR; China National Center for Bioinformation (CNCB); National Genomics Data Center (NGDC); genomic data sharing

Mesh:

Year:  2020        PMID: 32102777     DOI: 10.16288/j.yczz.20-030

Source DB:  PubMed          Journal:  Yi Chuan        ISSN: 0253-9772


  76 in total

1.  New framework for recombination and adaptive evolution analysis with application to the novel coronavirus SARS-CoV-2.

Authors:  Yinghan Wang; Jinfeng Zeng; Chi Zhang; Cai Chen; Zekai Qiu; Jiali Pang; Yutian Xu; Zhiqi Dong; Yanxin Song; Weiying Liu; Peipei Dong; Litao Sun; Yao-Qing Chen; Yuelong Shu; Xiangjun Du
Journal:  Brief Bioinform       Date:  2021-04-22       Impact factor: 11.622

2.  Databases, Knowledgebases, and Software Tools for Virus Informatics.

Authors:  Yuxin Lin; Yulan Qian; Xin Qi; Bairong Shen
Journal:  Adv Exp Med Biol       Date:  2022       Impact factor: 2.622

3.  Database Resources of the National Genomics Data Center, China National Center for Bioinformation in 2022.

Authors: 
Journal:  Nucleic Acids Res       Date:  2022-01-07       Impact factor: 16.971

4.  Targeting liquid-liquid phase separation of SARS-CoV-2 nucleocapsid protein promotes innate antiviral immunity by elevating MAVS activity.

Authors:  Shuai Wang; Tong Dai; Ziran Qin; Ting Pan; Feng Chu; Lingfeng Lou; Long Zhang; Bing Yang; Huizhe Huang; Huasong Lu; Fangfang Zhou
Journal:  Nat Cell Biol       Date:  2021-07-08       Impact factor: 28.824

5.  Genomic Elucidation of a COVID-19 Resurgence and Local Transmission of SARS-CoV-2 in Guangzhou, China.

Authors:  Hong-Ling Jia; Peng Li; Hong-Jie Liu; Jia-Yong Zhong; Peng-Zhe Qin; Wen-Zhe Su; Ying-Feng Zheng; Kui-Biao Li; Qing Zeng; Jin-Hui Li; Li-Zhong Li; Lan Cao; Ji-Bin Wu; Yi-Yun Chen; Lei-Li Jia; Hong-Bin Song; Qi-Wei Zhang; Guang Yang; Chun-Xia Jing; Xiao-Chen Bo; Zhou-Bin Zhang; Biao Di; Chuan-Le Xiao; Ming Ni
Journal:  J Clin Microbiol       Date:  2021-07-19       Impact factor: 5.948

6.  Prediction of potential small interfering RNA molecules for silencing of the spike gene of SARS-CoV-2.

Authors:  Kingshuk Panda; Kalichamy Alagarasu; Sarah S Cherian; Deepti Parashar
Journal:  Indian J Med Res       Date:  2021 Jan & Feb       Impact factor: 2.375

7.  Quasispecies of SARS-CoV-2 revealed by single nucleotide polymorphisms (SNPs) analysis.

Authors:  Rongsui Gao; Wenhong Zu; Yang Liu; Junhua Li; Zeyao Li; Yanling Wen; Haiyan Wang; Jing Yuan; Lin Cheng; Shengyuan Zhang; Yu Zhang; Shuye Zhang; Weilong Liu; Xun Lan; Lei Liu; Feng Li; Zheng Zhang
Journal:  Virulence       Date:  2021-12       Impact factor: 5.882

8.  Coronavirus GenBrowser for monitoring the transmission and evolution of SARS-CoV-2.

Authors:  Dalang Yu; Xiao Yang; Bixia Tang; Yi-Hsuan Pan; Jianing Yang; Guangya Duan; Junwei Zhu; Zi-Qian Hao; Hailong Mu; Long Dai; Wangjie Hu; Mochen Zhang; Ying Cui; Tong Jin; Cui-Ping Li; Lina Ma; Xiao Su; Guoqing Zhang; Wenming Zhao; Haipeng Li
Journal:  Brief Bioinform       Date:  2022-03-10       Impact factor: 11.622

9.  [Diagnostic efficacy of three test kits for SARS-CoV-2 nucleic acid detection].

Authors:  Lihua Shen; Fei Huang; Xiang Chen; Zuan Xiong; Xiaoyu Yang; Hui Li; Feng Cheng; Jian Guo; Guofu Gong
Journal:  Zhejiang Da Xue Xue Bao Yi Xue Ban       Date:  2020-05-25

10.  SARS-CoV-2 mutations altering regulatory properties: deciphering host's and virus's perspectives.

Authors:  Abul Bashar Mir Md Khademul Islam; Md Abdullah-Al-Kamran Khan
Journal:  Gene Rep       Date:  2021-06-11
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