| Literature DB >> 32102538 |
Doaa Mamdouh Aly1, Nadida Abdul-Hameed Gohar2, Afaf Ahmed Abd El-Hady1, Marwa Khairy3, Mona Mohsen Abdullatif2.
Abstract
BACKGROUND: Egypt has the highest prevalence of hepatitis C virus (HCV) worldwide. Which make liver cirrhosis and hepatocellular carcinoma (HCC) major health concerns in Egypt. Circulating microRNAs (miRNAs) have been investigated as biomarkers for malignancies. We investigated miRNA gene expression of Lethal-7 (let-7) cluster: let7-a-1, let-7d-1, let-7f-1 and miRNA (miR)143/145 cluster in sera of HCC patients and chronic HCV patients.Entities:
Keywords: Hepatitis C Virus; Hepatocellular carcinoma; MicroRNA; PCR
Mesh:
Substances:
Year: 2020 PMID: 32102538 PMCID: PMC7332122 DOI: 10.31557/APJCP.2020.21.2.555
Source DB: PubMed Journal: Asian Pac J Cancer Prev ISSN: 1513-7368
Target miRNA Sequences to be Studied and Amplified by qRT-PCR
| Target MiRNA | Qiagen Catalog No. | Sanger Accession | Mature sequence |
|---|---|---|---|
| hsa-let-7a-5p | MS00031220 | MIMAT0000062 | UGAGGUAGUAGGUUGUAUAGUU |
| hsa-let-7d-5p | MS00003136 | MIMAT0000065 | AGAGGUAGUAGGUUGCAUAGUU |
| hsa-let-7f-5p | MS00006489 | MIMAT0000067 | UGAGGUAGUAGAUUGUAUAGUU |
| hsa-miR-143-3p | MS00003514 | MIMAT0000435 | UGAGAUGAAGCACUGUAGCUC |
| hsa-miR-145-5p | MS00003528 | MIMAT0000437 | GUCCAGUUUUCCCAGGAAUCCCU |
Clinical Data of the HCC, Liver Cirrhosis and HCV Groups
| Item | HCC (n=40) | Cirrhosis (n=20) | HCV (n=20) | p |
|---|---|---|---|---|
| Smoking | 23 (57.5%) | 6 (30%) | 4 (20%) | <0.001 |
| Diabetes | 14 (35%) | 10 (50%) | 4 (20%) | <0.001 |
| Bilharziasis | 19 (47.5%) | 6 (30%) | 4 (20%) | 0.090 |
| Family history of cancer | 24 (60%) | 3(15%) | 5 (25%) | 0.001 |
Clinicopathological and Radiological Data of HCC Group
| Parameter | Value | |
|---|---|---|
| Largest diameter of main tumor (cm) | < 3cm | 16 (40%) |
| 3-5cm | 14 (35%) | |
| >5cm | 10 (25%) | |
| BCLC staging | Stage Zero to A | 11 (27.5%) |
| Stage B | 14 (35%) | |
| Stage C to D | 15 (37.5%) | |
The Median Values of Fold Changes of miRNAs among the Studied Groups
| Median values of fold changes | |||||
| HCC (n=40) | Cirrhosis (n=20) | HCV (n=20) | Control (n=40) | p | |
| Let-7a-1 | 0.526 | 4.37 * | 0.31† | 1.07 | 0.011 |
| (0.145-2.26) | (0.7- 8.27) | (0.034-2.88) | (0.16-7.03) | ||
| Let-7d-1 | 0.673 | 1.79 | 0.79 | 2.34 | 0.28 |
| (0.0915-2.51) | (0.94-3.88) | (0.75-6.88) | (0.15-5.7) | ||
| Let-7f-1 | 0.84 | 1.4 | 0.51 | 1.58 | 0.166 |
| (0.197-1.90) | (0.65-4.63) | (0.19-1.52) | (0.35-4.09) | ||
| miR-143 | 0.089 | 0.44 | 0.06 | 0.94 *‡ | 0.001 |
| (0.0247-0.81) | (0.1-2.02) | (0.013-0.273) | (0.09-7.39) | ||
| miR-145 | 0.265 | 1.13 | 0.19 | 0.80* | 0.003 |
| (0.0832-0.85) | (0.27-2.74) | (0.06-0.6) | (0.21-4.2) | ||
All Data are presented median as (25th -75th percentiles); Results were expressed as fold change (FC); *significant difference from HCC group at P < 0.05; † significant difference from liver cirrhosis group at P < 0.05; ‡ significant difference from HCV group at P < 0.05
Figure 1A, Box and whisker plot of Let7a1, Let7d1and Let 7f1 fold change among the four studied groups. B, Box and whisker plot of miR-143 and miR-145 fold change among the four studied group
Figure 2A, ROC curve for let-7a-1 to discriminate HCC from liver cirrhosis; B, ROC curve for miR-143&145 to discriminate HCC from controls; C, ROC curve analysis for AFP and let-7a-1 to discriminate liver cirrhosis from HCV
Comparison of Receiver Operating Characteristic Curves for Serum AFP, let-7a-1, and Combination of both in HCC Versus Cirrhosis Group
| Variable | Cut off | Sensitivity | Specificity | PVP | PVN | DA |
|---|---|---|---|---|---|---|
| AFP | 132 ng/ml | 82.5% | 100% | 100% | 74.1% | 88.3% |
| Let-7a-1 | ≤ 3.0 | 70% | 82.5% | 66.7% | 84.6% | 78.3% |
| AFP + | One positive of two | 95% | 100% | 100% | 90.9% | 96.6% |
PVP, Predictive value of positive; PVN, Predictive value of negative; DA, Diagnostic accuracy.
Comparison of Receiver Operating Characteristic Curves for Serum miR-143 and miR-145 in the HCC Group Versus the Control Group
| Variable | Cut off | Sensitivity | Specificity | PVP | PVN | DA |
|---|---|---|---|---|---|---|
| miR-143 | ≤0.43 | 62.5% | 72.5% | 69.4% | 65.9% | 67.5% |
| miR-145 | ≤0.462 | 65% | 67.5% | 66.7% | 65.9% | 66.3% |
PVP, Predictive value of positive; PVN, Predictive value of negative; DA, Diagnostic accuracy.
Figure 3Heat Map of Studied miRNAs Expression; (Group1, HCC; Group 2, cirrhosis and Group 3, HCV).
Comparison of Receiver Operating Characteristic Curves for Serum AFP, let-7a-1, and Combination of both in Cirrhosis Versus HCV Group
| Variable | Cut off | Sensitivity | Specificity | PVP | PVN | DA |
|---|---|---|---|---|---|---|
| AFP | 10 ng/ml | 70% | 100% | 100% | 76.9% | 85% |
| Let-7a-1 | ≥1.5 | 75% | 70% | 71.4% | 73.7% | 72.5% |
| AFP + | One positive of two | 95% | 100% | 95% | 95.2% | 95% |
PVP, Predictive value of positive; PVN, Predictive value of negative; DA, Diagnostic accuracy.
Clinical Data of the HCC and Liver Cirrhosis Groups
| Item | HCC | Liver cirrhosis | p |
|---|---|---|---|
| Ascites | 23 (57.5%) | 16 (80%) | < 0.001 |
| Hepatic encephalopathy | 18 (45%) | 10 (50%) | 0.001 |
| Child Pugh Class | HCC | Liver cirrhosis | p |
| A | 8 (20%) | 3 (15%) | 0.422 |
| B | 19 (47.5%) | 7 (35%) | |
| C | 13 (32.5%) | 10 (50%) |
Data are presented as number (percentage)
Laboratory Data of the Four Studied Groups
| Parameter | HCC (n=40) | Cirrhosis (n=20) | HCV (n=20) | Control (n=40) | p |
|---|---|---|---|---|---|
| PC (%) | 71.75 | 53* | 99.5*† | 97.5*† | <0.001 |
| INR | 1.31 | 1.5 | 1.005*† | 1.03*† | <0.001 |
| ALT (IU/l) | 55 | 46 | 28.5*† | 10*†‡ | <0.001 |
| AST (IU/l) | 64.5 | 59.5 | 27.5*† | 16.5*†‡ | <0.001 |
| Albumin (g/dl) | 2.82 | 2.75 | 4.2*† | 4.1*† | <0.001 |
| TBIL (mg/dl) | 2.0 | 2.1 | 0.5*† | 0.75*† | <0.001 |
| DBIL (mg/dl) | 0.61 | 0.7 | 0.115*† | 0.1*†‡ | <0.001 |
| AFP(ng/ml) | 271 | 15.5 | 4 | ---- | <0.001 |
Data are presented median (25th -75th percentiles); *significant difference from the HCC group; † significant difference from the liver cirrhosis group, ‡ significant difference from HCV group