Literature DB >> 32101419

PyBERTHART: A Relativistic Real-Time Four-Component TDDFT Implementation Using Prototyping Techniques Based on Python.

Matteo De Santis1,2, Loriano Storchi2,3, Leonardo Belpassi2, Harry M Quiney4, Francesco Tarantelli1,2.   

Abstract

We present a real-time time-dependent four-component Dirac-Kohn-Sham (RT-TDDKS) implementation based on the BERTHA code. This new implementation takes advantage of modern software engineering, including the prototyping techniques. The software design follows a three step approach: (i) the prototype implementation of a time-propagation algorithm in nonrelativistic real-time TDDFT within the Psi4NumPy framework, which provides a suitable environment for the creation of a clear, readable, and easy to test reference code in Python, (ii) the design of an original Python application programming interface for the relativistic four-component code BERTHA (PyBERTHA), which has an efficient computational kernel for relativistic integrals written in FORTRAN, and (iii) the porting of the time-propagation scheme enveloped within the Psi4NumPy framework to PyBERTHA. The propagation scheme consequently resides in a single readable Python computer code that is easy to maintain and in which the key quantities, such as the Dirac-Kohn-Sham and dipole matrices, can be accessed directly from the PyBERTHA module. For linear algebra operations (matrix-matrix multiplications and diagonalization) we use the highly optimized procedures implemented in the popular NumPy library. The overhead introduced by the Python interface to BERTHA is almost negligible (less than 1% evaluated on the SCF procedure), and the interoperability between different programming languages (FORTRAN, C, and Python) does not affect the numerical stability of the time-propagation scheme. Our new RT-TDDKS implementation has been employed to investigate the stability of the time-propagation procedure in combination with a density-fitting algorithm (both for the Coulomb and for the exchange-correlation matrix construction), which are employed in BERTHA to speed up the Dirac-Kohn-Sham matrix evaluation. On the basis of systematic calculations, employing several density-fitting basis sets of increasing accuracy, we showed that quantitative agreement can be achieved in combination with extended-fitting basis sets, with an error in the Coulomb energy below 1 μ-hartree. Convergence of the transition energies increasing of quality of the fitting basis sets has been also observed. Our data suggest that the error in the Coulomb energy may also represent a good estimate of the fitting basis set quality for real-time electron dynamics simulations. Further, we study the applicability of the RT-TDDKS method in combination with both weak- and extreme strong-field regime. Numerical results of excited-state transitions for the Group 12 atoms are reported and compared with a previous real-time Dirac-Kohn-Sham implementation (Repisky et al. J. Chem. Theory Comput. 2015, 11, 980-991). Finally, calculations of high harmonic generation in the hydrogen molecule and Au dimer have been also carried out. We were able to generate high harmonics with relatively well-defined peaks up to the 21st and 13th order in the case of H2 and Au2, respectively. Our findings show that the four-component structure of the Dirac-Kohn-Sham Hamiltonian provides a suitable theoretical framework, with no intrinsic unfavorable features, to study molecules in the strong-field regime.

Entities:  

Year:  2020        PMID: 32101419     DOI: 10.1021/acs.jctc.0c00053

Source DB:  PubMed          Journal:  J Chem Theory Comput        ISSN: 1549-9618            Impact factor:   6.006


  5 in total

1.  Spectroscopic/Bond Property Relationship in Group 11 Dihydrides via Relativistic Four-Component Methods.

Authors:  Diego Sorbelli; Matteo De Santis; Paola Belanzoni; Leonardo Belpassi
Journal:  J Phys Chem A       Date:  2020-12-02       Impact factor: 2.781

2.  Environment Effects on X-Ray Absorption Spectra With Quantum Embedded Real-Time Time-Dependent Density Functional Theory Approaches.

Authors:  Matteo De Santis; Valérie Vallet; André Severo Pereira Gomes
Journal:  Front Chem       Date:  2022-02-28       Impact factor: 5.221

3.  Frozen-Density Embedding for Including Environmental Effects in the Dirac-Kohn-Sham Theory: An Implementation Based on Density Fitting and Prototyping Techniques.

Authors:  Matteo De Santis; Diego Sorbelli; Valérie Vallet; André Severo Pereira Gomes; Loriano Storchi; Leonardo Belpassi
Journal:  J Chem Theory Comput       Date:  2022-09-29       Impact factor: 6.578

4.  Environmental Effects with Frozen-Density Embedding in Real-Time Time-Dependent Density Functional Theory Using Localized Basis Functions.

Authors:  Matteo De Santis; Leonardo Belpassi; Christoph R Jacob; André Severo Pereira Gomes; Francesco Tarantelli; Lucas Visscher; Loriano Storchi
Journal:  J Chem Theory Comput       Date:  2020-08-15       Impact factor: 6.006

5.  Accurate X-ray Absorption Spectra near L- and M-Edges from Relativistic Four-Component Damped Response Time-Dependent Density Functional Theory.

Authors:  Lukas Konecny; Jan Vicha; Stanislav Komorovsky; Kenneth Ruud; Michal Repisky
Journal:  Inorg Chem       Date:  2021-12-27       Impact factor: 5.165

  5 in total

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