Literature DB >> 32101406

Structure of Condensed Phase Peptides: Insights from Vibrational Circular Dichroism and Raman Optical Activity Techniques.

Timothy A Keiderling1.   

Abstract

Peptides and proteins are naturally chiral molecular systems so that sensing their structure and conformation with chirality-based spectral methods is an obvious and long-used diagnostic application. Extending chiroptical techniques to measurement of vibrational transitions, in the form of vibrational circular dichroism (VCD) and Raman optical activity (ROA), expands the number and types of excitations available that might provide structural insight and can provide an alternate and, in some cases, a more distinctive conformational probe. Since the dominant repeating structural element in peptides is the locally achiral amide group, VCD senses the polymeric structure through amide coupling, which is directly dependent on secondary structure. Determination of the type and relative contribution of these structural components through empirical correlation with spectral character has been the main application of VCD for peptides and proteins, although this is now reinforced by extensive theoretical modeling. Monitoring structural and conformational change induced by environmental perturbations provides another important application. More recently, VCD has been used to detect morphological variations in fibril states of aggregated peptides and proteins. ROA has parallel secondary structural sensitivities, with more applications for proteins than peptides, and has more sensitivity to local configuration and side chains. This review covers the range of peptide studies done with VCD and extends them to compare with example protein and ROA applications.

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Year:  2020        PMID: 32101406     DOI: 10.1021/acs.chemrev.9b00636

Source DB:  PubMed          Journal:  Chem Rev        ISSN: 0009-2665            Impact factor:   60.622


  10 in total

1.  Understanding of chiral site-dependent enantioselective identification on a plasmon-free semiconductor based SERS substrate.

Authors:  Jing Xu; Yuanfei Xue; Xiaoxia Jian; Yue Zhao; Zhenqing Dai; Jingwen Xu; Zhida Gao; Ye Mei; Yan-Yan Song
Journal:  Chem Sci       Date:  2022-05-11       Impact factor: 9.969

2.  Monitoring peptide tyrosine nitration by spectroscopic methods.

Authors:  Petr Niederhafner; Martin Šafařík; Jitka Neburková; Timothy A Keiderling; Petr Bouř; Jaroslav Šebestík
Journal:  Amino Acids       Date:  2020-11-18       Impact factor: 3.520

3.  All-dielectric chiral-field-enhanced Raman optical activity.

Authors:  Ting-Hui Xiao; Zhenzhou Cheng; Zhenyi Luo; Akihiro Isozaki; Kotaro Hiramatsu; Tamitake Itoh; Masahiro Nomura; Satoshi Iwamoto; Keisuke Goda
Journal:  Nat Commun       Date:  2021-05-24       Impact factor: 14.919

4.  A convenient protein library for spectroscopic calibrations.

Authors:  Joëlle De Meutter; Erik Goormaghtigh
Journal:  Comput Struct Biotechnol J       Date:  2020-07-10       Impact factor: 7.271

5.  Unambiguous Stereochemical Assignment of Cyclo(Phe-Pro), Cyclo(Leu-Pro), and Cyclo(Val-Pro) by Electronic Circular Dichroic Spectroscopy.

Authors:  Alison Domzalski; Liliana Margent; Valeria Vigo; Faizunnahar Dewan; Naga Vara Kishore Pilarsetty; Yujia Xu; Akira Kawamura
Journal:  Molecules       Date:  2021-10-02       Impact factor: 4.411

6.  Paving the way to conformationally unravel complex glycopeptide antibiotics by means of Raman optical activity.

Authors:  Roy Aerts; Jente Vanhove; Wouter Herrebout; Christian Johannessen
Journal:  Chem Sci       Date:  2021-03-29       Impact factor: 9.825

7.  Polarization-dispersive imaging spectrometer for scattering circular dichroism spectroscopy of single chiral nanostructures.

Authors:  Shuang Zhou; Jie Bian; Peng Chen; Mo Xie; Jie Chao; Wei Hu; Yanqing Lu; Weihua Zhang
Journal:  Light Sci Appl       Date:  2022-03-18       Impact factor: 17.782

8.  A Computational Protocol for Vibrational Circular Dichroism Spectra of Cyclic Oligopeptides.

Authors:  Karolina Di Remigio Eikås; Maarten T P Beerepoot; Kenneth Ruud
Journal:  J Phys Chem A       Date:  2022-08-05       Impact factor: 2.944

9.  Vibrational Circular Dichroism from DFT Molecular Dynamics: The AWV Method.

Authors:  Daria Ruth Galimberti
Journal:  J Chem Theory Comput       Date:  2022-09-16       Impact factor: 6.578

10.  The Assignment of the Absolute Configuration of Non-Cyclic Sesquiterpenes by Vibrational and Electronic Circular Dichroism: The Example of Chiliadenus lopadusanus Metabolites.

Authors:  Giuseppe Mazzeo; Alessio Cimmino; Giovanna Longhi; Marco Masi; Antonio Evidente; Sergio Abbate
Journal:  Biomolecules       Date:  2021-12-18
  10 in total

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