Literature DB >> 32096699

Complete Circularized Genome Data of Two Spanish strains of Xylella fastidiosa (IVIA5235 and IVIA5901) Using Hybrid Assembly Approaches.

Luis F Arias-Giraldo1, Annalisa Giampetruzzi2, Madis Metsis3, Ester Marco-Noales4, Juan Imperial5, María P Velasco-Amo1, Miguel Román-Écija1, Blanca B Landa1.   

Abstract

Xylella fastidiosa is an economically important plant pathogenic bacterium of global importance associated, since 2013, with a devastating epidemic in olive trees in Italy. Since then, several outbreaks of this pathogen have been reported in other European member countries including Spain, France, and Portugal. In Spain, the three major subspecies (subsp. fastidiosa, multiplex, and pauca) of the bacterium have been detected in the Balearic Islands, but only subspecies multiplex in the mainland (Alicante). We present the first complete genome sequences of two Spanish strains: X. fastidiosa subsp. fastidiosa IVIA5235 from Mallorca and X. fastidiosa subsp. multiplex IVIA5901 from Alicante, using Oxford Nanopore and Illumina sequence reads, and two hybrid approaches for genome assembly. These completed genomes will provide a resource to better understand the biology of these X. fastidiosa strains.

Entities:  

Keywords:  Illumina; Oxford Nanopore; Xylella fastidiosa; bacteriology; hybrid assembly; population biology

Year:  2020        PMID: 32096699     DOI: 10.1094/PHYTO-01-20-0012-A

Source DB:  PubMed          Journal:  Phytopathology        ISSN: 0031-949X            Impact factor:   4.025


  2 in total

1.  Use of traC Gene to Type the Incidence and Distribution of pXFAS_5235 Plasmid-Bearing Strains of Xylella fastidiosa subsp. fastidiosa ST1 in Spain.

Authors:  María Pilar Velasco-Amo; Luis F Arias-Giraldo; Concepción Olivares-García; Nicolás Denancé; Marie-Agnès Jacques; Blanca B Landa
Journal:  Plants (Basel)       Date:  2022-06-13

2.  Xylella fastidiosa Infection Reshapes Microbial Composition and Network Associations in the Xylem of Almond Trees.

Authors:  Manuel Anguita-Maeso; Aitana Ares-Yebra; Carmen Haro; Miguel Román-Écija; Concepción Olivares-García; Joana Costa; Ester Marco-Noales; Amparo Ferrer; Juan A Navas-Cortés; Blanca B Landa
Journal:  Front Microbiol       Date:  2022-07-14       Impact factor: 6.064

  2 in total

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