Literature DB >> 32088315

Updating the portfolio of physicochemical descriptors related to permeability in the beyond the rule of 5 chemical space.

Giuseppe Ermondi1, Maura Vallaro1, Gilles Goetz2, Marina Shalaeva3, Giulia Caron4.   

Abstract

Beyond rule of 5 (bRo5) molecules are attracting significant interest in modern drug discovery mostly because many novel targets require large and more flexible structures. The main aim of this paper is the identification of ad hoc bRo5 physicochemical descriptors of ionization, lipophilicity, polarity and chameleonicity and their measurement. We used different methods to collect ionization (pKa measures and log k'80 PLRP-S trends), lipophilicity (in octanol/water, in apolar systems and in biomimetic environments), polarity (Δlog Poct-tol, EPSA and Δlog KWIAM) and chameleonicity (ChameLogD) descriptors for 26 bRo5 drugs. A second aim was to check the relationship between physicochemical descriptors and permeability for a subset of compounds for which solid permeability values are reported in the literature. Results showed that the physicochemical profile in the bRo5 chemical space is often experimentally accessible, albeit more tools are required to overcome limitations of individual methods. For the investigated compounds, permeability is governed by Δlog Poct-tol and preliminary data support that chameleonicity could also have an impact.
Copyright © 2020 Elsevier B.V. All rights reserved.

Entities:  

Keywords:  Beyond rule of 5; Chameleonicity; Ionization; Lipophilicity; Permeability; Polarity; Property-based drug design

Mesh:

Substances:

Year:  2020        PMID: 32088315     DOI: 10.1016/j.ejps.2020.105274

Source DB:  PubMed          Journal:  Eur J Pharm Sci        ISSN: 0928-0987            Impact factor:   4.384


  5 in total

1.  Steering New Drug Discovery Campaigns: Permeability, Solubility, and Physicochemical Properties in the bRo5 Chemical Space.

Authors:  Giulia Caron; Jan Kihlberg; Gilles Goetz; Ekaterina Ratkova; Vasanthanathan Poongavanam; Giuseppe Ermondi
Journal:  ACS Med Chem Lett       Date:  2021-01-05       Impact factor: 4.345

2.  Can small drugs predict the intrinsic aqueous solubility of 'beyond Rule of 5' big drugs?

Authors:  Alex Avdeef; Manfred Kansy
Journal:  ADMET DMPK       Date:  2020-04-25

Review 3.  Key Considerations in Targeted Protein Degradation Drug Discovery and Development.

Authors:  Liena Qin; Han Dai; Junfeng Wang
Journal:  Front Chem       Date:  2022-08-01       Impact factor: 5.545

4.  Refinement of Computational Access to Molecular Physicochemical Properties: From Ro5 to bRo5.

Authors:  Matteo Rossi Sebastiano; Diego Garcia Jimenez; Maura Vallaro; Giulia Caron; Giuseppe Ermondi
Journal:  J Med Chem       Date:  2022-09-12       Impact factor: 8.039

5.  Designing Soluble PROTACs: Strategies and Preliminary Guidelines.

Authors:  Diego García Jiménez; Matteo Rossi Sebastiano; Maura Vallaro; Valentina Mileo; Daniela Pizzirani; Elisa Moretti; Giuseppe Ermondi; Giulia Caron
Journal:  J Med Chem       Date:  2022-04-25       Impact factor: 8.039

  5 in total

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