Literature DB >> 32088307

Transcriptome-wide and differential expression network analyses of childhood asthma in nasal epithelium.

Erick Forno1, Rong Zhang2, Yale Jiang3, Soyeon Kim1, Qi Yan1, Zhao Ren4, Yueh-Ying Han1, Nadia Boutaoui1, Franziska Rosser1, Daniel E Weeks5, Edna Acosta-Pérez6, Angel Colón-Semidey7, María Alvarez7, Glorisa Canino6, Wei Chen1, Juan C Celedón8.   

Abstract

Entities:  

Year:  2020        PMID: 32088307      PMCID: PMC7438239          DOI: 10.1016/j.jaci.2020.02.005

Source DB:  PubMed          Journal:  J Allergy Clin Immunol        ISSN: 0091-6749            Impact factor:   10.793


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  9 in total

1.  Distinct epithelial gene expression phenotypes in childhood respiratory allergy.

Authors:  Lisa Giovannini-Chami; Brice Marcet; Chimène Moreilhon; Benoît Chevalier; Marius I Illie; Kévin Lebrigand; Karine Robbe-Sermesant; Thierry Bourrier; Jean-François Michiels; Bernard Mari; Dominique Crénesse; Paul Hofman; Jacques de Blic; Laurent Castillo; Marc Albertini; Pascal Barbry
Journal:  Eur Respir J       Date:  2011-10-17       Impact factor: 16.671

2.  Meta-analysis of airway epithelium gene expression in asthma.

Authors:  Yi-Hsuan Tsai; Joel S Parker; Ivana V Yang; Samir N P Kelada
Journal:  Eur Respir J       Date:  2018-05-17       Impact factor: 16.671

3.  The Nasal Methylome: A Key to Understanding Allergic Asthma.

Authors:  Ivana V Yang; Adam Richards; Elizabeth J Davidson; Allen D Stevens; Christena A Kolakowski; Richard J Martin; David A Schwartz
Journal:  Am J Respir Crit Care Med       Date:  2017-03-15       Impact factor: 21.405

4.  The nasal methylome and childhood atopic asthma.

Authors:  Ivana V Yang; Brent S Pedersen; Andrew H Liu; George T O'Connor; Dinesh Pillai; Meyer Kattan; Rana Tawil Misiak; Rebecca Gruchalla; Stanley J Szefler; Gurjit K Khurana Hershey; Carolyn Kercsmar; Adam Richards; Allen D Stevens; Christena A Kolakowski; Melanie Makhija; Christine A Sorkness; Rebecca Z Krouse; Cynthia Visness; Elizabeth J Davidson; Corinne E Hennessy; Richard J Martin; Alkis Togias; William W Busse; David A Schwartz
Journal:  J Allergy Clin Immunol       Date:  2016-10-13       Impact factor: 10.793

5.  DNA methylation in nasal epithelium, atopy, and atopic asthma in children: a genome-wide study.

Authors:  Erick Forno; Ting Wang; Cancan Qi; Qi Yan; Cheng-Jian Xu; Nadia Boutaoui; Yueh-Ying Han; Daniel E Weeks; Yale Jiang; Franziska Rosser; Judith M Vonk; Sharon Brouwer; Edna Acosta-Perez; Angel Colón-Semidey; María Alvarez; Glorisa Canino; Gerard H Koppelman; Wei Chen; Juan C Celedón
Journal:  Lancet Respir Med       Date:  2018-12-21       Impact factor: 30.700

6.  Multitissue Transcriptomics Delineates the Diversity of Airway T Cell Functions in Asthma.

Authors:  Akul Singhania; Joshua C Wallington; Caroline G Smith; Daniel Horowitz; Karl J Staples; Peter H Howarth; Stephan D Gadola; Ratko Djukanović; Christopher H Woelk; Timothy S C Hinks
Journal:  Am J Respir Cell Mol Biol       Date:  2018-02       Impact factor: 6.914

7.  STRING v11: protein-protein association networks with increased coverage, supporting functional discovery in genome-wide experimental datasets.

Authors:  Damian Szklarczyk; Annika L Gable; David Lyon; Alexander Junge; Stefan Wyder; Jaime Huerta-Cepas; Milan Simonovic; Nadezhda T Doncheva; John H Morris; Peer Bork; Lars J Jensen; Christian von Mering
Journal:  Nucleic Acids Res       Date:  2019-01-08       Impact factor: 16.971

8.  A Nasal Brush-based Classifier of Asthma Identified by Machine Learning Analysis of Nasal RNA Sequence Data.

Authors:  Gaurav Pandey; Om P Pandey; Angela J Rogers; Mehmet E Ahsen; Gabriel E Hoffman; Benjamin A Raby; Scott T Weiss; Eric E Schadt; Supinda Bunyavanich
Journal:  Sci Rep       Date:  2018-06-11       Impact factor: 4.379

9.  SILGGM: An extensive R package for efficient statistical inference in large-scale gene networks.

Authors:  Rong Zhang; Zhao Ren; Wei Chen
Journal:  PLoS Comput Biol       Date:  2018-08-13       Impact factor: 4.475

  9 in total
  7 in total

1.  Expression Quantitative Trait Methylation Analysis Reveals Methylomic Associations With Gene Expression in Childhood Asthma.

Authors:  Soyeon Kim; Erick Forno; Rong Zhang; Hyun Jung Park; Zhongli Xu; Qi Yan; Nadia Boutaoui; Edna Acosta-Pérez; Glorisa Canino; Wei Chen; Juan C Celedón
Journal:  Chest       Date:  2020-06-20       Impact factor: 9.410

Review 2.  Asthma in the Americas: An Update: A Joint Perspective from the Brazilian Thoracic Society, Canadian Thoracic Society, Latin American Thoracic Society, and American Thoracic Society.

Authors:  Erick Forno; Diego D Brandenburg; Jose A Castro-Rodriguez; Carlos A Celis-Preciado; Fernando Holguin; Christopher Licskai; Stephanie Lovinsky-Desir; Marcia Pizzichini; Alejandro Teper; Connie Yang; Juan C Celedón
Journal:  Ann Am Thorac Soc       Date:  2022-04

3.  Differential gene expression in nasal airway epithelium from overweight or obese youth with asthma.

Authors:  Zhongli Xu; Erick Forno; Edna Acosta-Pérez; Yueh-Ying Han; Franziska Rosser; Michelle L Manni; Glorisa Canino; Wei Chen; Juan C Celedón
Journal:  Pediatr Allergy Immunol       Date:  2022-04       Impact factor: 5.464

4.  A genome-wide association study of severe asthma exacerbations in Latino children and adolescents.

Authors:  Qi Yan; Erick Forno; Esther Herrera-Luis; Maria Pino-Yanes; Cancan Qi; Raimon Rios; Yueh-Ying Han; Soyeon Kim; Sam Oh; Edna Acosta-Pérez; Rong Zhang; Donglei Hu; Celeste Eng; Scott Huntsman; Lydiana Avila; Nadia Boutaoui; Michelle M Cloutier; Manuel E Soto-Quiros; Cheng-Jian Xu; Scott T Weiss; Jessica Lasky-Su; Megan R Kiedrowski; Camila Figueiredo; Jennifer Bomberger; Mauricio L Barreto; Glorisa Canino; Wei Chen; Gerard H Koppelman; Esteban G Burchard; Juan C Celedón
Journal:  Eur Respir J       Date:  2021-04-01       Impact factor: 16.671

Review 5.  The Predictive Role of Biomarkers and Genetics in Childhood Asthma Exacerbations.

Authors:  Emanuela di Palmo; Erika Cantarelli; Arianna Catelli; Giampaolo Ricci; Marcella Gallucci; Angela Miniaci; Andrea Pession
Journal:  Int J Mol Sci       Date:  2021-04-28       Impact factor: 5.923

6.  CHIT: an allele-specific method for testing the association between molecular quantitative traits and phenotype-genotype interaction.

Authors:  Qi Yan; Erick Forno; Juan C Celedón; Wei Chen; Daniel E Weeks
Journal:  Bioinformatics       Date:  2021-07-29       Impact factor: 6.931

7.  Exposure to violence, chronic stress, nasal DNA methylation, and atopic asthma in children.

Authors:  Qi Yan; Erick Forno; Andres Cardenas; Cancan Qi; Yueh-Ying Han; Edna Acosta-Pérez; Soyeon Kim; Rong Zhang; Nadia Boutaoui; Glorisa Canino; Judith M Vonk; Cheng-Jian Xu; Wei Chen; Anna Marsland; Emily Oken; Diane R Gold; Gerard H Koppelman; Juan C Celedón
Journal:  Pediatr Pulmonol       Date:  2021-03-22
  7 in total

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