Literature DB >> 3208739

Nuclear scaffold attachment sites in the human globin gene complexes.

A P Jarman1, D R Higgs.   

Abstract

In an analysis of a 90-kb region around the human beta-globin gene complex we have identified at least eight sites of attachment to the nuclear scaffold (SARs). While these have many potential functions, there appears to be a particular association with sequences important in the regulation of the complex. Two SARs are close to the known enhancer-like elements of the beta-globin gene. SARs flanking the complex co-habit with the boundaries of the putative beta-like globin gene regulatory domain. In contrast, we have detected no SARs within a 140-kb region of the human alpha-globin gene complex. If SARs play a role in the regulation of gene expression then this structural difference would imply a difference in the regulation of the two complexes.

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Year:  1988        PMID: 3208739      PMCID: PMC454829          DOI: 10.1002/j.1460-2075.1988.tb03205.x

Source DB:  PubMed          Journal:  EMBO J        ISSN: 0261-4189            Impact factor:   11.598


  37 in total

1.  Recombination at the human alpha-globin gene cluster: sequence features and topological constraints.

Authors:  R D Nicholls; N Fischel-Ghodsian; D R Higgs
Journal:  Cell       Date:  1987-05-08       Impact factor: 41.582

2.  Chromosomal loop anchorage of the kappa immunoglobulin gene occurs next to the enhancer in a region containing topoisomerase II sites.

Authors:  P N Cockerill; W T Garrard
Journal:  Cell       Date:  1986-01-31       Impact factor: 41.582

3.  Domains in chromatin structure.

Authors:  T Igó-Kemenes; H G Zachau
Journal:  Cold Spring Harb Symp Quant Biol       Date:  1978

4.  The "beta-like-globin" gene domain in human erythroid cells.

Authors:  D Tuan; W Solomon; Q Li; I M London
Journal:  Proc Natl Acad Sci U S A       Date:  1985-10       Impact factor: 11.205

5.  Identification of a nuclear protein matrix.

Authors:  R Berezney; D S Coffey
Journal:  Biochem Biophys Res Commun       Date:  1974-10-23       Impact factor: 3.575

6.  In situ localization of DNA topoisomerase II, a major polypeptide component of the Drosophila nuclear matrix fraction.

Authors:  M Berrios; N Osheroff; P A Fisher
Journal:  Proc Natl Acad Sci U S A       Date:  1985-06       Impact factor: 11.205

7.  Anchorage of the Chinese hamster dihydrofolate reductase gene to the nuclear scaffold occurs in an intragenic region.

Authors:  E Käs; L A Chasin
Journal:  J Mol Biol       Date:  1987-12-20       Impact factor: 5.469

8.  Position-independent, high-level expression of the human beta-globin gene in transgenic mice.

Authors:  F Grosveld; G B van Assendelft; D R Greaves; G Kollias
Journal:  Cell       Date:  1987-12-24       Impact factor: 41.582

9.  Human fetal to adult hemoglobin switching: changes in chromatin structure of the beta-globin gene locus.

Authors:  M Groudine; T Kohwi-Shigematsu; R Gelinas; G Stamatoyannopoulos; T Papayannopoulou
Journal:  Proc Natl Acad Sci U S A       Date:  1983-12       Impact factor: 11.205

10.  Supercoils in human DNA.

Authors:  P R Cook; I A Brazell
Journal:  J Cell Sci       Date:  1975-11       Impact factor: 5.285

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  62 in total

1.  Conserved characteristics of heterochromatin-forming DNA at the 15q11-q13 imprinting center.

Authors:  J M Greally; T A Gray; J M Gabriel; L Song; S Zemel; R D Nicholls
Journal:  Proc Natl Acad Sci U S A       Date:  1999-12-07       Impact factor: 11.205

2.  The analysis of the poly(ADPR) polymerase mode of action in rat testis nuclear fractions defines a specific poly(ADP-ribosyl)ation system associated with the nuclear matrix.

Authors:  P Quesada; F Tramontano; M R Faraone-Mennella; B Farina
Journal:  Mol Cell Biochem       Date:  2000-02       Impact factor: 3.396

3.  Rearrangement of chromatin domains during development in Xenopus.

Authors:  Y Vassetzky; A Hair; M Méchali
Journal:  Genes Dev       Date:  2000-06-15       Impact factor: 11.361

4.  In silico prediction of scaffold/matrix attachment regions in large genomic sequences.

Authors:  Matthias Frisch; Kornelie Frech; Andreas Klingenhoff; Kerstin Cartharius; Ines Liebich; Thomas Werner
Journal:  Genome Res       Date:  2002-02       Impact factor: 9.043

5.  Scaffold/matrix attachment region elements interact with a p300-scaffold attachment factor A complex and are bound by acetylated nucleosomes.

Authors:  Joost H A Martens; Matty Verlaan; Eric Kalkhoven; Josephine C Dorsman; Alt Zantema
Journal:  Mol Cell Biol       Date:  2002-04       Impact factor: 4.272

6.  Identification of a conserved erythroid specific domain of histone acetylation across the alpha-globin gene cluster.

Authors:  E Anguita; C A Johnson; W G Wood; B M Turner; D R Higgs
Journal:  Proc Natl Acad Sci U S A       Date:  2001-10-02       Impact factor: 11.205

7.  Nuclear scaffolds and scaffold-attachment regions in higher plants.

Authors:  G Hall; G C Allen; D S Loer; W F Thompson; S Spiker
Journal:  Proc Natl Acad Sci U S A       Date:  1991-10-15       Impact factor: 11.205

8.  The matrix attachment region-binding protein SATB1 participates in negative regulation of tissue-specific gene expression.

Authors:  J Liu; D Bramblett; Q Zhu; M Lozano; R Kobayashi; S R Ross; J P Dudley
Journal:  Mol Cell Biol       Date:  1997-09       Impact factor: 4.272

Review 9.  The control of expression of the alpha-globin gene cluster.

Authors:  Hua-bing Zhang; De-Pei Liu; Chih-Chuan Liang
Journal:  Int J Hematol       Date:  2002-12       Impact factor: 2.490

10.  Evaluation of sequence motifs found in scaffold/matrix-attached regions (S/MARs).

Authors:  I Liebich; J Bode; I Reuter; E Wingender
Journal:  Nucleic Acids Res       Date:  2002-08-01       Impact factor: 16.971

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