| Literature DB >> 32084271 |
Cathrine Jespersgaard1, Amalie Brunbjerg Hey1, Tomas Ilginis1, Tina Duelund Hjortshøj1, Mingyan Fang1, Mette Bertelsen1, Niels Bech1, Hanne Jensen1, Lasse Jonsgaard Larsen1, Zeynep Tümer1,1, Thomas Rosenberg1, Karen Brøndum-Nielsen1, Lisbeth Birk Møller1, Karen Grønskov1.
Abstract
Purpose: Cone-rod dystrophy (CRD) is a rare hereditary eye disorder that causes progressive degeneration of cone and rod photoreceptors. More than 30 genes, including RAB28, have been associated with CRD; however, only a few RAB28 variants have been reported to be associated with CRD. In this study, we describe two brothers with CRD and a homozygous missense variant, c.55G>A (p.Gly19Arg), in RAB28.Entities:
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Year: 2020 PMID: 32084271 PMCID: PMC7326575 DOI: 10.1167/iovs.61.2.29
Source DB: PubMed Journal: Invest Ophthalmol Vis Sci ISSN: 0146-0404 Impact factor: 4.799
Figure 1.(A) Localization of sequence variants in RAB28 thought to cause CRD. (B) Gly19 is a conserved amino acid through evolution, as are surrounding amino acids.
Clinical Features
| Individual | Age at Diagnosis (y) | Age at Last Visit (y) | Refractive Error at Diagnosis | Visual Acuity at Diagnosis | Visual Acuity at Final Visit | Color Vision at Presentation | ERG | Goldmann Visual Field IV4e | Other |
|---|---|---|---|---|---|---|---|---|---|
| IV:1 | 20 | 67 | –12D BE | RE, 3/60 LE, 6/60 | RE, LP – P LE, LP + P | Red–green color vision deficit | Age 20: severely reduced scotopic responses; photopic responses undetectable | Age 20: normal peripheral visual field | Polydactyly Age 26: glaucoma Age 40: bilateral cataract surgery Age 60: prostate cancer |
| IV:3 | 14 | 61 | –11D BE | RE, 6/18 LE, 6/24 | RE, 6/60 LE, 6/75 | Protan-type color vision deficit | Age 29: moderately reduced scotopic responses; absent light-adapted single flash and flicker cone responses, Age 61: recordable but severely reduced scotopic ERG; unrecordable photopic responses | Age 14: mild concentric constriction of peripheral visual field Age 61: eccentric fixation; two paracentral islands of preserved visual field of 20° and 10° diameter, respectively | Polydactyly Age 39: bilateral cataract surgery Age 41: glaucoma Age 54: prostate cancer Age 59: skin melanoma |
RE, right eye, LE, left eye, BE, both eyes; LP + P and LP – P, light perception visual acuity with or without projection, respectively.
Figure 2.Pedigree of the family. For simplicity not all family members mentioned in the text are shown in the figure. Open circles and squares are unaffected females and males, respectively. Filled squares indicate a symptom depending on location in the square.
Figure 3.Ultra-wide-field fundus image (A) and blue-light autofluorescence (C) image of IV-3 shows peripapillary atrophy and well-circumscribed chorioretinal atrophy in the macula; furthermore, two to three rows of multiple nummular atrophic and heavily pigmented chorioretinal areas are noted. Severely attenuated retinal vessels, especially arteries, are observed. (B) OCT shows an ellipsoid zone and outer limiting membrane preserved temporal to fovea (white arrow) and intraretinal cysts and lamellar retinal hole formation in the fovea (asterisk). (D) Ultra-wide-field fundus image of IV-1 demonstrates extensive atrophy of the retina and the choroid around the disk and nasal midperiphery and well-demarcated retina and choroid atrophy in the macula. As for IV-3, severely attenuated retinal vessels, especially arteries, are observed. The far-peripheral retina is relatively spared in IV-1. (E, F) Progression of retinal degeneration over time. Right-eye color fundus photographs of younger sibling in 1993 (E) and in 2018 (F). Central chorioretinal atrophy with hyperpigmentation has developed in the macula. Peripapillary and nasal midperipheral atrophy has significantly progressed. Images were taken with different cameras and different angle lenses; therefore, direct comparison of vascular changes was complicated. However, vessels seem to have straightened slightly over time.
Figure 4.(A) Serum reduction leads to increased expression of RAB28. Expression profiles of RAB28 mRNA were normalized to the amount of endogenous GADPH mRNA. A significant increase in the level of RAB28 was observed for all samples under reduced-serum conditions compared to standard growth conditions (**P = 0.001815 for control; *P = 0.007181 for IV-1; **P = 0.003329 for IV-3). Three independent experiments were performed with similar results. Statistical analysis was performed using t-tests. (B) Ciliary localization of RAB28 is significantly reduced in patient cell lines. IFM analysis of control and patient cells grown under reduced-serum conditions. Cilia were labeled with anti-acetylated alfa-tubulin (AC-TUB) antibody (red). RAB28 protein (green) can be observed in the cilia in the two control cells (white arrows), whereas none of the three displayed patient cells (IV-1) shows ciliary localization of RAB28. Nuclei were visualized with DAPI staining (blue). The ciliary localization of RAB28 was significantly reduced in both patient cell lines compared to control (see Table 2). Scale bar, 10 µm. (C) siRNA-mediated knock down of RAB28 leads to a reduction of ciliary RAB28. Normalized expression profile of RAB28 mRNA expression in control cells treated with siRNA is compared with RAB28 (siRAB28) and a negative control (siScramble) grown under serum reduced conditions. Expression profiles of RAB28 were normalized to the amount of endogenous GAPDH mRNA. The expression level in control cells grown under standard conditions treated with siScramble is set to 1. Treatment with siRab28 decreases RAB28 expression by 75.76 ± 2% under reduced-serum conditions (see Table 2). GADPH, glyceraldehyde 3-phosphate dehydrogenase; AC-TUB, anti-acetylated alfa-tubulin; IFM, immunofluorescence microscopy.
Investigation of Cilia in Patient Versus Control Fibroblasts
| Number of Cells | Number of Cilia | RAB28-Positive Cilia (%) | ||
|---|---|---|---|---|
| 1 | Control cells | 156 | 124 | 91 (73%) |
| 2 | Patient IV-1 cells | 165 | 142 | 51 (36%)** |
| 3 | Patient IV-3 cells | 223 | 179 | 65 (36%)*** |
| 4 | Control cells + siScramble | 166 | 128 | 94 (73%) |
| 5 | Control cells + siRAB28 | 155 | 104 | 33 (28%)*** |
Rows 1–3: The numbers represent the sum of the five cultures investigated in two independent experiments. Cilia were labeled with antibody against Arl13B or acetylated alfa-tubulin and the RAB28 protein was labeled with specific RAB28 antibody. Nuclei were visualized with DAPI staining. The ciliary localization of RAB28 was significantly reduced in both patients’ cell lines compared to the control (patient IV-1/control, **P = 0.000746; patient IV-3/control, ***P = 0.000408), whereas no significant difference was observed in the number of cilia (ciliogenesis: patient IV-1/control, P = 0.630227; patient IV-3/control, P = 0.950036). Statistical analysis was performed using the χ2 test. Rows 4 and 5: Control cell cultures were treated with siRNA against RAB28 or with a negative control siRNA (siScramble). The numbers represent the sum from two independent experiments. Cilia were labeled with anti-Arl13B or anti-acetylated alpha-tubulin antibody and the RAB28 protein was labeled with specific RAB28 antibody; all cells were grown under serum-restricted conditions. Nuclei were visualized with DAPI staining. The ciliary localization of RAB28 was significantly reduced in the control cells treated with siRNA against RAB28 compared with cells treated with siScramble (siRAB28/siScramble, ***P = 0.000429). No significant difference was observed in the number of cilia (ciliogenesis: siRAB28/siScramble, P = 0.377439). Statistical analysis was performed using the χ2 test.
Sequence Variants in RAB28
| Exon/Intron | cDNA (NM_004249.3) | Predicted Protein Change | Domain/Putative Functional Consequence | Status (ho/he) | Phenotype | rs Number/MAF gnomAD | ACMG Classification | Ref. |
|---|---|---|---|---|---|---|---|---|
| 1 | c.55G>A | p.Gly19Arg | G1 domain G domain GXXXXGKS/T | Ho | CRD, polydactyly | 0,00000771 only heterozygous alleles (1) | LP (PM1, PM2, PP3, PS3) | This study |
| 1 | c.68C>T | p.Ser23Phe | G1 domain G domain GXXXXGKS/T | Ho | CRD | rs769199865 gnomAD 0,00003193 only heterozygous alleles (7) | VUS (PM2, PP3) | Lee et al. (2017) |
| Intron 2 | c.172+1G>C | p.? splicing defect | Skipping of exon 2 | Ho | CRD | rs875989778, NP | LP (PVS1, PM2) | Riveiro-Álvarez et al. (2015) |
| 5 | c.409C>T | p.Arg137* | — | Ho | CRD | rs398123044 0.000008148 only heterozygous alleles (2) | LP (PVS1, PM2) | Roosing et al. (2013) |
| 6 | c.565C>T | p.Gln189* | — | Ho | CRD | rs786200944, NP | LP (PVS1, PM2) | Roosing et al. (2013) |
| 8 | c.651T>G | p.Cys217Trp | — | Ho | CRD | rs751163782 0.000004076 only heterozygous alleles (1) | VUS (PM2, PP3) | Riveiro-Álvarez et al. (2015) |
Sequence variations reported in RAB28. PM1, PM2, PP1, PP3, and PVS1 refer to ACMG classification according to Richards et al. Ho, homozygous; He, heterozygous; VUS, variant of unknown significance; NP, not present; LP, likely pathogenic.