Literature DB >> 3208179

Merging of distance matrices and classification by dynamic clustering.

M O Delorme1, A Hénaut.   

Abstract

The graphical representation of distance matrices in a Euclidean space allows the merging of two distance matrices since the two matrices have shared elements. The graphical representation of the merging of the two distance matrices is associated with a robust method of classification that allows one to distinguish species for which membership to a cluster cannot be established with certainty. These possibilities are exploited to test the consistency of phylogenetic trees, and to establish exact relations between species for which one possesses different independent distance measurements (distance matrices established from several types of sequences for instance). The whole set of programs is written in BASIC and runs on microcomputers.

Mesh:

Year:  1988        PMID: 3208179     DOI: 10.1093/bioinformatics/4.4.453

Source DB:  PubMed          Journal:  Comput Appl Biosci        ISSN: 0266-7061


  3 in total

1.  A comparison of several similarity indices used in the classification of protein sequences: a multivariate analysis.

Authors:  C Landès; A Hénaut; J L Risler
Journal:  Nucleic Acids Res       Date:  1992-07-25       Impact factor: 16.971

2.  Coping with cold: the genome of the versatile marine Antarctica bacterium Pseudoalteromonas haloplanktis TAC125.

Authors:  Claudine Médigue; Evelyne Krin; Géraldine Pascal; Valérie Barbe; Andreas Bernsel; Philippe N Bertin; Frankie Cheung; Stéphane Cruveiller; Salvino D'Amico; Angela Duilio; Gang Fang; Georges Feller; Christine Ho; Sophie Mangenot; Gennaro Marino; Johan Nilsson; Ermenegilda Parrilli; Eduardo P C Rocha; Zoé Rouy; Agnieszka Sekowska; Maria Luisa Tutino; David Vallenet; Gunnar von Heijne; Antoine Danchin
Journal:  Genome Res       Date:  2005-09-16       Impact factor: 9.043

3.  Detection of new genes in a bacterial genome using Markov models for three gene classes.

Authors:  M Borodovsky; J D McIninch; E V Koonin; K E Rudd; C Médigue; A Danchin
Journal:  Nucleic Acids Res       Date:  1995-09-11       Impact factor: 16.971

  3 in total

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