Literature DB >> 32079767

Molecular mechanism of biased signaling in a prototypical G protein-coupled receptor.

Carl-Mikael Suomivuori1,2,3,4, Naomi R Latorraca1,2,3,4,5, Laura M Wingler6,7, Stephan Eismann1,2,3,4,8, Matthew C King1,2,3,4, Alissa L W Kleinhenz6,7,9, Meredith A Skiba10, Dean P Staus6,7, Andrew C Kruse10, Robert J Lefkowitz6,7,11, Ron O Dror12,2,3,4,5.   

Abstract

Biased signaling, in which different ligands that bind to the same G protein-coupled receptor preferentially trigger distinct signaling pathways, holds great promise for the design of safer and more effective drugs. Its structural mechanism remains unclear, however, hampering efforts to design drugs with desired signaling profiles. Here, we use extensive atomic-level molecular dynamics simulations to determine how arrestin bias and G protein bias arise at the angiotensin II type 1 receptor. The receptor adopts two major signaling conformations, one of which couples almost exclusively to arrestin, whereas the other also couples effectively to a G protein. A long-range allosteric network allows ligands in the extracellular binding pocket to favor either of the two intracellular conformations. Guided by this computationally determined mechanism, we designed ligands with desired signaling profiles.
Copyright © 2020, American Association for the Advancement of Science.

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Year:  2020        PMID: 32079767      PMCID: PMC7259329          DOI: 10.1126/science.aaz0326

Source DB:  PubMed          Journal:  Science        ISSN: 0036-8075            Impact factor:   47.728


  64 in total

1.  The effect of pH on beta(2) adrenoceptor function. Evidence for protonation-dependent activation.

Authors:  P Ghanouni; H Schambye; R Seifert; T W Lee; S G Rasmussen; U Gether; B K Kobilka
Journal:  J Biol Chem       Date:  2000-02-04       Impact factor: 5.157

2.  Routine Microsecond Molecular Dynamics Simulations with AMBER on GPUs. 2. Explicit Solvent Particle Mesh Ewald.

Authors:  Romelia Salomon-Ferrer; Andreas W Götz; Duncan Poole; Scott Le Grand; Ross C Walker
Journal:  J Chem Theory Comput       Date:  2013-08-20       Impact factor: 6.006

3.  A temperature predictor for parallel tempering simulations.

Authors:  Alexandra Patriksson; David van der Spoel
Journal:  Phys Chem Chem Phys       Date:  2008-02-25       Impact factor: 3.676

4.  Structural determinants of 5-HT2B receptor activation and biased agonism.

Authors:  John D McCorvy; Daniel Wacker; Sheng Wang; Bemnat Agegnehu; Jing Liu; Katherine Lansu; Alexandra R Tribo; Reid H J Olsen; Tao Che; Jian Jin; Bryan L Roth
Journal:  Nat Struct Mol Biol       Date:  2018-08-20       Impact factor: 15.369

5.  Optimization of the additive CHARMM all-atom protein force field targeting improved sampling of the backbone φ, ψ and side-chain χ(1) and χ(2) dihedral angles.

Authors:  Robert B Best; Xiao Zhu; Jihyun Shim; Pedro E M Lopes; Jeetain Mittal; Michael Feig; Alexander D Mackerell
Journal:  J Chem Theory Comput       Date:  2012-07-18       Impact factor: 6.006

6.  Sortase ligation enables homogeneous GPCR phosphorylation to reveal diversity in β-arrestin coupling.

Authors:  Dean P Staus; Laura M Wingler; Minjung Choi; Biswaranjan Pani; Aashish Manglik; Andrew C Kruse; Robert J Lefkowitz
Journal:  Proc Natl Acad Sci U S A       Date:  2018-03-26       Impact factor: 11.205

7.  Crystal structure of the human angiotensin II type 2 receptor bound to an angiotensin II analog.

Authors:  Hidetsugu Asada; Shoichiro Horita; Kunio Hirata; Mitsunori Shiroishi; Yuki Shiimura; Hiroko Iwanari; Takao Hamakubo; Tatsuro Shimamura; Norimichi Nomura; Osamu Kusano-Arai; Tomoko Uemura; Chiyo Suno; Takuya Kobayashi; So Iwata
Journal:  Nat Struct Mol Biol       Date:  2018-07-02       Impact factor: 15.369

8.  Crystal structure of rhodopsin bound to arrestin by femtosecond X-ray laser.

Authors:  Yanyong Kang; X Edward Zhou; Xiang Gao; Yuanzheng He; Wei Liu; Andrii Ishchenko; Anton Barty; Thomas A White; Oleksandr Yefanov; Gye Won Han; Qingping Xu; Parker W de Waal; Jiyuan Ke; M H Eileen Tan; Chenghai Zhang; Arne Moeller; Graham M West; Bruce D Pascal; Ned Van Eps; Lydia N Caro; Sergey A Vishnivetskiy; Regina J Lee; Kelly M Suino-Powell; Xin Gu; Kuntal Pal; Jinming Ma; Xiaoyong Zhi; Sébastien Boutet; Garth J Williams; Marc Messerschmidt; Cornelius Gati; Nadia A Zatsepin; Dingjie Wang; Daniel James; Shibom Basu; Shatabdi Roy-Chowdhury; Chelsie E Conrad; Jesse Coe; Haiguang Liu; Stella Lisova; Christopher Kupitz; Ingo Grotjohann; Raimund Fromme; Yi Jiang; Minjia Tan; Huaiyu Yang; Jun Li; Meitian Wang; Zhong Zheng; Dianfan Li; Nicole Howe; Yingming Zhao; Jörg Standfuss; Kay Diederichs; Yuhui Dong; Clinton S Potter; Bridget Carragher; Martin Caffrey; Hualiang Jiang; Henry N Chapman; John C H Spence; Petra Fromme; Uwe Weierstall; Oliver P Ernst; Vsevolod Katritch; Vsevolod V Gurevich; Patrick R Griffin; Wayne L Hubbell; Raymond C Stevens; Vadim Cherezov; Karsten Melcher; H Eric Xu
Journal:  Nature       Date:  2015-07-22       Impact factor: 49.962

9.  Investigating allosteric effects on the functional dynamics of β2-adrenergic ternary complexes with enhanced-sampling simulations.

Authors:  Noureldin Saleh; Giorgio Saladino; Francesco Luigi Gervasio; Timothy Clark
Journal:  Chem Sci       Date:  2017-03-24       Impact factor: 9.825

10.  Structure of the µ-opioid receptor-Gi protein complex.

Authors:  Antoine Koehl; Hongli Hu; Shoji Maeda; Yan Zhang; Qianhui Qu; Joseph M Paggi; Naomi R Latorraca; Daniel Hilger; Roger Dawson; Hugues Matile; Gebhard F X Schertler; Sebastien Granier; William I Weis; Ron O Dror; Aashish Manglik; Georgios Skiniotis; Brian K Kobilka
Journal:  Nature       Date:  2018-06-13       Impact factor: 49.962

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  54 in total

1.  Angiotensin and biased analogs induce structurally distinct active conformations within a GPCR.

Authors:  Laura M Wingler; Meredith A Skiba; Conor McMahon; Dean P Staus; Alissa L W Kleinhenz; Carl-Mikael Suomivuori; Naomi R Latorraca; Ron O Dror; Robert J Lefkowitz; Andrew C Kruse
Journal:  Science       Date:  2020-02-21       Impact factor: 47.728

2.  All-atom adaptively biased path optimization of Src kinase conformational inactivation: Switched electrostatic network in the concerted motion of αC helix and the activation loop.

Authors:  Heng Wu; He Huang; Carol Beth Post
Journal:  J Chem Phys       Date:  2020-11-07       Impact factor: 3.488

Review 3.  A cellular perspective of bias at G protein-coupled receptors.

Authors:  Thomas J Fernandez; Monica De Maria; Braden T Lobingier
Journal:  Protein Sci       Date:  2020-04-27       Impact factor: 6.725

4.  Agonist that activates the µ-opioid receptor in acidified microenvironments inhibits colitis pain without side effects.

Authors:  Nestor Nivardo Jiménez-Vargas; Yang Yu; Dane D Jensen; Diana Daeun Bok; Matthew Wisdom; Rocco Latorre; Cintya Lopez; Josue O Jaramillo-Polanco; Claudius Degro; Mabel Guzman-Rodriguez; Quentin Tsang; Zachary Snow; Brian L Schmidt; David E Reed; Alan Edward Lomax; Kara Gross Margolis; Christoph Stein; Nigel W Bunnett; Stephen J Vanner
Journal:  Gut       Date:  2021-03-30       Impact factor: 23.059

5.  Deciphering collaborative sidechain motions in proteins during molecular dynamics simulations.

Authors:  Bruck Taddese; Antoine Garnier; Hervé Abdi; Daniel Henrion; Marie Chabbert
Journal:  Sci Rep       Date:  2020-09-28       Impact factor: 4.379

Review 6.  Biased signaling in naturally occurring mutations of G protein-coupled receptors associated with diverse human diseases.

Authors:  Li-Kun Yang; Zhi-Shuai Hou; Ya-Xiong Tao
Journal:  Biochim Biophys Acta Mol Basis Dis       Date:  2020-09-17       Impact factor: 5.187

Review 7.  Biased ligands at opioid receptors: Current status and future directions.

Authors:  Tao Che; Hemlata Dwivedi-Agnihotri; Arun K Shukla; Bryan L Roth
Journal:  Sci Signal       Date:  2021-04-06       Impact factor: 8.192

Review 8.  Structural insights into ligand recognition and activation of angiotensin receptors.

Authors:  Haitao Zhang; Aleksandra Luginina; Alexey Mishin; Mithu Baidya; Arun K Shukla; Vadim Cherezov
Journal:  Trends Pharmacol Sci       Date:  2021-05-10       Impact factor: 14.819

Review 9.  Conformational Basis of G Protein-Coupled Receptor Signaling Versatility.

Authors:  Laura M Wingler; Robert J Lefkowitz
Journal:  Trends Cell Biol       Date:  2020-07-02       Impact factor: 20.808

Review 10.  Biased agonism at β-adrenergic receptors.

Authors:  Michael Ippolito; Jeffrey L Benovic
Journal:  Cell Signal       Date:  2020-12-29       Impact factor: 4.315

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