Literature DB >> 3207952

Sequence comparison with concave weighting functions.

W Miller, E W Myers.   

Abstract

Mesh：

Year:  1988        PMID： 3207952     DOI： 10.1007/bf02459948

Source DB:  PubMed          Journal:  Bull Math Biol        ISSN： 0092-8240            Impact factor:   1.758


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  8 in total

1.  Optimal sequence alignments.

Authors:  W M Fitch; T F Smith
Journal:  Proc Natl Acad Sci U S A       Date:  1983-03       Impact factor: 11.205

2.  Alignment of three biological sequences with an efficient traceback procedure.

Authors:  O Gotoh
Journal:  J Theor Biol       Date:  1986-08-07       Impact factor: 2.691

3.  A general method applicable to the search for similarities in the amino acid sequence of two proteins.

Authors:  S B Needleman; C D Wunsch
Journal:  J Mol Biol       Date:  1970-03       Impact factor: 5.469

4.  Fast optimal alignment.

Authors:  J W Fickett
Journal:  Nucleic Acids Res       Date:  1984-01-11       Impact factor: 16.971

5.  Comparative biosequence metrics.

Authors:  T F Smith; M S Waterman; W M Fitch
Journal:  J Mol Evol       Date:  1981       Impact factor: 2.395

6.  Identification of common molecular subsequences.

Authors:  T F Smith; M S Waterman
Journal:  J Mol Biol       Date:  1981-03-25       Impact factor: 5.469

7.  An improved algorithm for matching biological sequences.

Authors:  O Gotoh
Journal:  J Mol Biol       Date:  1982-12-15       Impact factor: 5.469

8.  Efficient sequence alignment algorithms.

Authors:  M S Waterman
Journal:  J Theor Biol       Date:  1984-06-07       Impact factor: 2.691
  8 in total
  23 in total

1.  Frequency of gaps observed in a structurally aligned protein pair database suggests a simple gap penalty function.

Authors:  Nalin C W Goonesekere; Byungkook Lee
Journal:  Nucleic Acids Res       Date:  2004-05-20       Impact factor: 16.971

2.  Finite-state models in the alignment of macromolecules.

Authors:  L Allison; C S Wallace; C N Yee
Journal:  J Mol Evol       Date:  1992-07       Impact factor: 2.395

3.  An O (N2 log N) restriction map comparison and search algorithm.

Authors:  E W Myers; X Huang
Journal:  Bull Math Biol       Date:  1992-07       Impact factor: 1.758

4.  A survey of multiple sequence comparison methods.

Authors:  S C Chan; A K Wong; D K Chiu
Journal:  Bull Math Biol       Date:  1992-07       Impact factor: 1.758

5.  Consistency of optimal sequence alignments.

Authors:  O Gotoh
Journal:  Bull Math Biol       Date:  1990       Impact factor: 1.758

6.  Ngila: global pairwise alignments with logarithmic and affine gap costs.

Authors:  Reed A Cartwright
Journal:  Bioinformatics       Date:  2007-03-25       Impact factor: 6.937

7.  Minimum message length encoding and the comparison of macromolecules.

Authors:  L Allison; C N Yee
Journal:  Bull Math Biol       Date:  1990       Impact factor: 1.758

8.  Optimal sequence alignment allowing for long gaps.

Authors:  O Gotoh
Journal:  Bull Math Biol       Date:  1990       Impact factor: 1.758

9.  Searching for repeats, as an example of using the generalised Ruzzo-Tompa algorithm to find optimal subsequences with gaps.

Authors:  John L Spouge; Leonardo Mariño-Ramírez; Sergey L Sheetlin
Journal:  Int J Bioinform Res Appl       Date:  2014

10.  A basic analysis toolkit for biological sequences.

Authors:  Raffaele Giancarlo; Alessandro Siragusa; Enrico Siragusa; Filippo Utro
Journal:  Algorithms Mol Biol       Date:  2007-09-18       Impact factor: 1.405
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