Literature DB >> 32078367

Cancer Informatics for Cancer Centers (CI4CC): Building a Community Focused on Sharing Ideas and Best Practices to Improve Cancer Care and Patient Outcomes.

Jill S Barnholtz-Sloan1, Dana E Rollison2, Amrita Basu3, Alexander D Borowsky4, Alex Bui5, Jack DiGiovanna6, Montserrat Garcia-Closas7, Jeanine M Genkinger8, Travis Gerke9, Marta Induni10, James V Lacey11, Lisa Mirel12, Jennifer B Permuth9,13, Joel Saltz14, Elizabeth A Shenkman15, Cornelia M Ulrich16, W Jim Zheng17, Sorena Nadaf18, Warren A Kibbe19.   

Abstract

Cancer Informatics for Cancer Centers (CI4CC) is a grassroots, nonprofit 501c3 organization intended to provide a focused national forum for engagement of senior cancer informatics leaders, primarily aimed at academic cancer centers anywhere in the world but with a special emphasis on the 70 National Cancer Institute-funded cancer centers. Although each of the participating cancer centers is structured differently, and leaders' titles vary, we know firsthand there are similarities in both the issues we face and the solutions we achieve. As a consortium, we have initiated a dedicated listserv, an open-initiatives program, and targeted biannual face-to-face meetings. These meetings are a place to review our priorities and initiatives, providing a forum for discussion of the strategic and pragmatic issues we, as informatics leaders, individually face at our respective institutions and cancer centers. Here we provide a brief history of the CI4CC organization and meeting highlights from the latest CI4CC meeting that took place in Napa, California from October 14-16, 2019. The focus of this meeting was "intersections between informatics, data science, and population science." We conclude with a discussion on "hot topics" on the horizon for cancer informatics.

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Mesh:

Year:  2020        PMID: 32078367      PMCID: PMC7186581          DOI: 10.1200/CCI.19.00166

Source DB:  PubMed          Journal:  JCO Clin Cancer Inform        ISSN: 2473-4276


  23 in total

1.  Core services: Reward bioinformaticians.

Authors:  Jeffrey Chang
Journal:  Nature       Date:  2015-04-09       Impact factor: 49.962

2.  Plasma MicroRNAs as Novel Biomarkers for Patients with Intraductal Papillary Mucinous Neoplasms of the Pancreas.

Authors:  Jennifer Permuth-Wey; Dung-Tsa Chen; William J Fulp; Sean J Yoder; Yonghong Zhang; Christina Georgeades; Kazim Husain; Barbara Ann Centeno; Anthony M Magliocco; Domenico Coppola; Mokenge Malafa
Journal:  Cancer Prev Res (Phila)       Date:  2015-09

3.  Muscle-strengthening physical activity is associated with cancer mortality: results from the 1998-2011 National Health Interview Surveys, National Death Index record linkage.

Authors:  Mohamamd Siahpush; Paraskevi A Farazi; Hongmei Wang; Regina E Robbins; Gopal K Singh; Dejun Su
Journal:  Cancer Causes Control       Date:  2019-04-19       Impact factor: 2.506

4.  A public health perspective on a national precision medicine cohort: balancing long-term knowledge generation with early health benefit.

Authors:  Muin J Khoury; James P Evans
Journal:  JAMA       Date:  2015-06-02       Impact factor: 56.272

5.  Characteristics of missed or interval colorectal cancer and patient survival: a population-based study.

Authors:  N Jewel Samadder; Karen Curtin; Thérèse M F Tuohy; Lisa Pappas; Ken Boucher; Dawn Provenzale; Kerry G Rowe; Geraldine P Mineau; Ken Smith; Richard Pimentel; Anne C Kirchhoff; Randall W Burt
Journal:  Gastroenterology       Date:  2014-01-11       Impact factor: 22.682

6.  A Containerized Software System for Generation, Management, and Exploration of Features from Whole Slide Tissue Images.

Authors:  Joel Saltz; Ashish Sharma; Ganesh Iyer; Erich Bremer; Feiqiao Wang; Alina Jasniewski; Tammy DiPrima; Jonas S Almeida; Yi Gao; Tianhao Zhao; Mary Saltz; Tahsin Kurc
Journal:  Cancer Res       Date:  2017-11-01       Impact factor: 12.701

7.  The Cancer Genomics Cloud: Collaborative, Reproducible, and Democratized-A New Paradigm in Large-Scale Computational Research.

Authors:  Jessica W Lau; Erik Lehnert; Anurag Sethi; Raunaq Malhotra; Gaurav Kaushik; Zeynep Onder; Nick Groves-Kirkby; Aleksandar Mihajlovic; Jack DiGiovanna; Mladen Srdic; Dragan Bajcic; Jelena Radenkovic; Vladimir Mladenovic; Damir Krstanovic; Vladan Arsenijevic; Djordje Klisic; Milan Mitrovic; Igor Bogicevic; Deniz Kural; Brandi Davis-Dusenbery
Journal:  Cancer Res       Date:  2017-11-01       Impact factor: 12.701

8.  BRCA1 mutations in primary breast and ovarian carcinomas.

Authors:  P A Futreal; Q Liu; D Shattuck-Eidens; C Cochran; K Harshman; S Tavtigian; L M Bennett; A Haugen-Strano; J Swensen; Y Miki
Journal:  Science       Date:  1994-10-07       Impact factor: 47.728

9.  Spatial Organization and Molecular Correlation of Tumor-Infiltrating Lymphocytes Using Deep Learning on Pathology Images.

Authors:  Joel Saltz; Rajarsi Gupta; Le Hou; Tahsin Kurc; Pankaj Singh; Vu Nguyen; Dimitris Samaras; Kenneth R Shroyer; Tianhao Zhao; Rebecca Batiste; John Van Arnam; Ilya Shmulevich; Arvind U K Rao; Alexander J Lazar; Ashish Sharma; Vésteinn Thorsson
Journal:  Cell Rep       Date:  2018-04-03       Impact factor: 9.423

10.  Combining radiomic features with a miRNA classifier may improve prediction of malignant pathology for pancreatic intraductal papillary mucinous neoplasms.

Authors:  Jennifer B Permuth; Jung Choi; Yoganand Balarunathan; Jongphil Kim; Dung-Tsa Chen; Lu Chen; Sonia Orcutt; Matthew P Doepker; Kenneth Gage; Geoffrey Zhang; Kujtim Latifi; Sarah Hoffe; Kun Jiang; Domenico Coppola; Barbara A Centeno; Anthony Magliocco; Qian Li; Jose Trevino; Nipun Merchant; Robert Gillies; Mokenge Malafa
Journal:  Oncotarget       Date:  2016-12-27
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  2 in total

1.  Social influences on physical activity for establishing criteria leading to exercise persistence.

Authors:  Ensela Mema; Everett S Spain; Corby K Martin; James O Hill; R Drew Sayer; Howard D McInvale; Lee A Evans; Nicholas H Gist; Alexander D Borowsky; Diana M Thomas
Journal:  PLoS One       Date:  2022-10-19       Impact factor: 3.752

2.  Cancer Informatics for Cancer Centers: Scientific Drivers for Informatics, Data Science, and Care in Pediatric, Adolescent, and Young Adult Cancer.

Authors:  Anthony R Kerlavage; Anne C Kirchhoff; Jaime M Guidry Auvil; Norman E Sharpless; Kara L Davis; Karlyne Reilly; Gregory Reaman; Lynne Penberthy; Dennis Deapen; Amie Hwang; Eric B Durbin; Sara L Gallotto; Richard Aplenc; Samuel L Volchenboum; Allison P Heath; Bruce J Aronow; Jinghui Zhang; Olena Vaske; Todd A Alonzo; Paul C Nathan; Jenny N Poynter; Greg Armstrong; Erin E Hahn; Karen J Wernli; Casey Greene; Jack DiGiovanna; Adam C Resnick; Eve R Shalley; Sorena Nadaf; Warren A Kibbe
Journal:  JCO Clin Cancer Inform       Date:  2021-08
  2 in total

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