| Literature DB >> 32064362 |
Patricia L Hall1, Rossana Sanchez1, Arthur F Hagar2, S Caleb Jerris3, Angela Wittenauer1, William R Wilcox1.
Abstract
We conducted a pilot newborn screening (NBS) study for Pompe disease (PD) and mucopolysaccharidosis type I (MPS I) in the multiethnic population of Georgia. We screened 59,332 infants using a two-tier strategy of flow injection tandem mass spectrometry (FIA-MSMS) enzyme assays. The first tier of testing was a 2-plex assay measuring PD and MPS I enzyme activity, followed by a second-tier test with additional enzymes to improve specificity. Interpretation of results was performed using post-analytical tools created using Collaborative Laboratory Integrated Reports (CLIR). We identified a single case of infantile onset PD, two cases of late onset PD, and one pseudodeficiency. The positive predictive value (PPV) for PD screening during the study was 66.7%. No cases of MPS I were identified during the study period, but there were 2 confirmed cases of pseudodeficiency and 6 cases lost to follow up. The two-tier screening strategy was successful in reducing false positive results and allowed for the identification and early treatment of a case of infantile PD but the frequency of pseudodeficiency in MPS I is problematic. Molecular testing is required and should be covered by the screening program to avoid delays in case resolution.Entities:
Keywords: Pompe disease; mucopolysaccharidosis type I; newborn screening; post-analytical tools; pseudodeficiency
Year: 2020 PMID: 32064362 PMCID: PMC7021244 DOI: 10.3390/ijns6010002
Source DB: PubMed Journal: Int J Neonatal Screen ISSN: 2409-515X
Published results of US-based newborn screening (NBS) programs screening for Pompe disease (PD) and mucopolysaccharidosis type I (MPS I). Georgia data from this study are included in the last row.
| Region Screened | Methodology | Interpretation | Disorder | # Screened | Screen Positive | True Positives | PPV (%) | Screen Positive Rate (%) |
|---|---|---|---|---|---|---|---|---|
| Illinois [ | MSMS (1 tier) | % daily median | Pompe | 219,973 | 139 | 10 | 7.2 | 0.06 |
| MPS I | 219,973 | 151 | 1 | 0.7 | 0.07 | |||
| Kentucky [ | MSMS (2 tier) | Post-analytical tools | Pompe | 55,161 | 2 | 2 | 100.0 | <0.002 |
| MPS I | 55,161 | 2 | 1 | 50.0 | <0.002 | |||
| Missouri [ | Digital microfluidics | Cutoff | Pompe | ~308,000 | 161 | 32 | 19.9 | 0.05 |
| MPS I | ~308,000 | 133 | 2 | 1.5 | 0.04 | |||
| New York [ | MSMS (1 tier) | % daily mean | Pompe | 18,105 | 6 | 1 | 16.7 | 0.03 |
| MPS I | 35,816 | 13 | 0 | 0.0 | 0.04 | |||
| North Carolina [ | MSMS (2 tier) + Sequencing | Cutoff (Initial) | MPS I | 62,734 | 54 | 1 | 1.9 | 0.09 |
| Georgia | MSMS (2 tier) | Post-analytical tools | Pompe | 59,332 | 6 | 4 | 66.7 | 0.01 |
| MPS I | 59,332 | 11 | 0 | 0.0 | 0.02 |
Figure 1Laboratory testing algorithm for Georgia pilot study screening for MPS I and PD. FIA-MSMS: flow injection tandem mass spectrometry, IDUS: alpha-iduronidase, GAA: alpha-glucosidase.
Figure 2Interpretation algorithm using post-analytical tools for Georgia pilot study for MPS I and PD.
Positive screens for PD during Georgia pilot study. Collaborative Laboratory Integrated Reports (CLIR) interpretation possibilities are uninformative (below 1st percentile), possible (1st–5th percentiles), likely (5th–20th percentiles) and very likely (>20th percentile). * Enzyme units are pmol/punch/hour. Enzyme interpretations are those reported by the laboratory performing confirmatory analysis. All GAA confirmation results were performed on DBS. Reference range is >3.88 pmol/punch/hour. Variant interpretations are those received from the clinical laboratory performing testing (B = benign; P = pathogenic; U = variant of uncertain significance). ** Classified as non-pathogenic in Erasmus database in 2012. See discussion in text.
| Case ID | Birth Weight (g) | Sex | Race | Age at Collection | DBS GAA | CLIR Score (Interpretation) | GAA Confirmation * | Glucose Tetrasaccharde | Allele 1 | Allele 2 | Outcome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| P1 | 3695 | F | Black | 24 | 2.555 | 37 (Possible) | 2.2 Abnormal | Normal | c.868A>G p.Asn290Asp (U) ** | c.2105G>A p.Arg702His (P) | Late onset PD |
| P2 | 3515 | F | White | 24 | 1.677 | 127 (Likely) | 3.9 Abnormal (per lab) | Normal | c.-32-13T>G (P) | c.2238G>C p.Trp746Cys (P) | Late onset PD |
| P3 | 2570 | M | Black | 114 | 1.026 | 103 (Possible) | Family refused follow-up | ||||
| P4 | 3360 | M | Black | 2 | 1.581 | 32 (Possible) | 2.7 Abnormal | Elevated | c.1755-1G>A (P) | c.2236T>C p.Trp746Arg (P) | Infantile onset PD |
| 56 | 1.103 | 127 (Likely) | |||||||||
| P5 | 2560 | M | Native Hawaiian/Pacific Islander | 33 | 1.019 | 127 (Likely) | 2.7 Abnormal | Normal | c.1726G>A/c.2065G>A p.Gly576Ser (B)/p.Glu689L (B) | c.1726G>A/c.2065G>A p.Gly576Ser/p.Glu689L | Pseudodeficiency |
Positive screens for MPS I during Georgia pilot study. CLIR interpretation possibilities are uninformative (below 1st percentile), possible (1st–5th percentiles), likely (5th–20th percentiles) and very likely (>20th percentile). Variant interpretations are those received from the clinical laboratory performing testing (B = benign; U = variant of uncertain significance). * Enzyme results interpreted by testing laboratory as abnormal; laboratory specific reference ranges are shown in parentheses. ** Cases 4 and 5 are twin siblings.
| Case ID | Birth Weight (g) | Sex | Race | Age at Collection (hours) | DBS IDUA | CLIR Score (Interpretation) | IDUA Confirmation | Glycosaminoglycans | Allele 1 | Allele 2 | CNV Analysis | Outcome |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| M1 | 3412 | M | Black | 32 | 0.194 | 346 (Likely) | 0.6 nmol/h/mL (≥1.0) * | Normal | c.923T>C p.Leu308Pro (U) | None | Negative | Unresolved (Lost to Genetics Follow-up) |
| M2 | 2994 | F | Black | 24 | 0.355 | 177 (Likely) | 4.2 nmol/h/mg protein (3.57–21.40) | Essentially Normal (Repeat Normal) | Not performed | Unaffected | ||
| M3 | 3470 | M | Black | 24 | 0.238 | 337 (Likely) | 7.4 pmol/punch/h (>8.0) | Normal | C.1238_1264del (U) | None | Negative | Unresolved (Lost to Genetics Follow-up) |
| M4 ** | 2320 | M | Black | 49 | 0.186 | 266 (Likely) | Family refused follow-up | |||||
| M5 ** | 2360 | M | Black | 50 | 0.226 | 228 (Likely) | Family refused follow-up | |||||
| M6 | 3820 | F | Black | 25 | 0.597 | 112 (Likely) | 5.7 nmol/h/mg protein (3.57–21.40) | Normal | Not performed | Unaffected | ||
| M7 | 3030 | M | Black | 40 | 0.222 | 335 (Likely) | 5.1 nmol/h/mg protein (3.57–21.40) | Normal | Not performed | Unaffected | ||
| M8 | 2817 | F | Black | 25 | 0.302 | 138 (Likely) | 1.6 nmol/h/mg protein (12.0–65) * | Normal | None | None | Negative | Unresolved (Lost to Genetics Follow-up) |
| M9 | 3165 | F | White | 25 | 0.242 | 266 (Likely) | 0.3 nmol/h/mg protein (3.57–21.40) * | Family refused further follow-up | ||||
| M10 | 2906 | F | Black | 25 | 0.403 | 212 (Likely) | 0.3 nmol/h/mL (≥1.0) * | Normal | c.235G>A p.Ala79Thr (B) | c.235G>A p.Ala79Thr (B) | Not performed | Pseudodeficiency |
| M11 | 3375 | M | Black | 50 | 0.323 | 200 (Likely) | 0.2 nmol/h/mg protein (3.57–21.40) * | Normal | c.235G>A p.Ala79Thr (B) | c.235G>A p.Ala79Thr (B) | Not performed | Pseudodeficiency |