Sharvil P Patel1, R Andrew Harkins2, Michelle J Lee2, Christopher R Flowers3, Jean L Koff4. 1. Emory University, Atlanta, GA. 2. Emory University School of Medicine, Atlanta, GA. 3. Department of Lymphoma and Myeloma, MD Anderson Cancer Center, Houston, TX. 4. Department of Hematology and Medical Oncology, Winship Cancer Institute, Emory University, Atlanta, GA. Electronic address: jkoff@emory.edu.
Abstract
INTRODUCTION: Diffuse large B-cell lymphoma (DLBCL) is genetically and clinically heterogeneous. Despite advances in genomic subtyping, standard frontline chemoimmunotherapy has remained unchanged for years. As high-throughput analysis becomes more accessible, characterizing drug-gene interactions in DLBCL could support patient-specific treatment strategies. MATERIALS AND METHODS: From our systematic literature review, we compiled a comprehensive list of somatic mutations implicated in DLBCL. We extracted reported and primary sequencing data for these mutations and assessed their association with signaling pathways, cell-of-origin subtypes, and clinical outcomes. RESULTS: Twenty-two targetable mutations present in ≥ 5% of patients with DLBCL were associated with unfavorable outcomes, yielding a predicted population of 31.7% of DLBCL cases with poor-risk disease and candidacy for targeted therapy. A second review identified 256 studies that had characterized the drug-gene interactions for these mutations via in vitro studies, mouse models, and/or clinical trials. CONCLUSIONS: Our novel approach linking the data from our systematic reviews with informatics tools identified high-risk DLBCL subgroups, DLBCL-specific drug-gene interactions, and potential populations for precision medicine trials.
INTRODUCTION: Diffuse large B-cell lymphoma (DLBCL) is genetically and clinically heterogeneous. Despite advances in genomic subtyping, standard frontline chemoimmunotherapy has remained unchanged for years. As high-throughput analysis becomes more accessible, characterizing drug-gene interactions in DLBCL could support patient-specific treatment strategies. MATERIALS AND METHODS: From our systematic literature review, we compiled a comprehensive list of somatic mutations implicated in DLBCL. We extracted reported and primary sequencing data for these mutations and assessed their association with signaling pathways, cell-of-origin subtypes, and clinical outcomes. RESULTS: Twenty-two targetable mutations present in ≥ 5% of patients with DLBCL were associated with unfavorable outcomes, yielding a predicted population of 31.7% of DLBCL cases with poor-risk disease and candidacy for targeted therapy. A second review identified 256 studies that had characterized the drug-gene interactions for these mutations via in vitro studies, mouse models, and/or clinical trials. CONCLUSIONS: Our novel approach linking the data from our systematic reviews with informatics tools identified high-risk DLBCL subgroups, DLBCL-specific drug-gene interactions, and potential populations for precision medicine trials.
Authors: Magdalena Klanova; Ladislav Andera; Jan Brazina; Jan Svadlenka; Simona Benesova; Jan Soukup; Dana Prukova; Dana Vejmelkova; Radek Jaksa; Karel Helman; Petra Vockova; Lucie Lateckova; Jan Molinsky; Bokang Calvin Lenyeletse Maswabi; Mahmudul Alam; Roman Kodet; Robert Pytlik; Marek Trneny; Pavel Klener Journal: Clin Cancer Res Date: 2015-10-14 Impact factor: 12.531
Authors: A Esteve-Arenys; J G Valero; A Chamorro-Jorganes; D Gonzalez; V Rodriguez; I Dlouhy; I Salaverria; E Campo; D Colomer; A Martinez; G Rymkiewicz; P Pérez-Galán; A Lopez-Guillermo; G Roué Journal: Oncogene Date: 2018-01-22 Impact factor: 9.867
Authors: Samantha M Jaglowski; Jeffrey A Jones; Veena Nagar; Joseph M Flynn; Leslie A Andritsos; Kami J Maddocks; Jennifer A Woyach; Kristie A Blum; Michael R Grever; Kelly Smucker; Amy S Ruppert; Nyla A Heerema; Gerard Lozanski; Mona Stefanos; Brian Munneke; Jamie-Sue West; Jutta K Neuenburg; Danelle F James; Nathan Hall; Amy J Johnson; John C Byrd Journal: Blood Date: 2015-06-26 Impact factor: 22.113
Authors: Anupama Reddy; Jenny Zhang; Nicholas S Davis; Andrea B Moffitt; Cassandra L Love; Alexander Waldrop; Sirpa Leppa; Annika Pasanen; Leo Meriranta; Marja-Liisa Karjalainen-Lindsberg; Peter Nørgaard; Mette Pedersen; Anne O Gang; Estrid Høgdall; Tayla B Heavican; Waseem Lone; Javeed Iqbal; Qiu Qin; Guojie Li; So Young Kim; Jane Healy; Kristy L Richards; Yuri Fedoriw; Leon Bernal-Mizrachi; Jean L Koff; Ashley D Staton; Christopher R Flowers; Ora Paltiel; Neta Goldschmidt; Maria Calaminici; Andrew Clear; John Gribben; Evelyn Nguyen; Magdalena B Czader; Sarah L Ondrejka; Angela Collie; Eric D Hsi; Eric Tse; Rex K H Au-Yeung; Yok-Lam Kwong; Gopesh Srivastava; William W L Choi; Andrew M Evens; Monika Pilichowska; Manju Sengar; Nishitha Reddy; Shaoying Li; Amy Chadburn; Leo I Gordon; Elaine S Jaffe; Shawn Levy; Rachel Rempel; Tiffany Tzeng; Lanie E Happ; Tushar Dave; Deepthi Rajagopalan; Jyotishka Datta; David B Dunson; Sandeep S Dave Journal: Cell Date: 2017-10-05 Impact factor: 41.582
Authors: Roland Schmitz; George W Wright; Da Wei Huang; Calvin A Johnson; James D Phelan; James Q Wang; Sandrine Roulland; Monica Kasbekar; Ryan M Young; Arthur L Shaffer; Daniel J Hodson; Wenming Xiao; Xin Yu; Yandan Yang; Hong Zhao; Weihong Xu; Xuelu Liu; Bin Zhou; Wei Du; Wing C Chan; Elaine S Jaffe; Randy D Gascoyne; Joseph M Connors; Elias Campo; Armando Lopez-Guillermo; Andreas Rosenwald; German Ott; Jan Delabie; Lisa M Rimsza; Kevin Tay Kuang Wei; Andrew D Zelenetz; John P Leonard; Nancy L Bartlett; Bao Tran; Jyoti Shetty; Yongmei Zhao; Dan R Soppet; Stefania Pittaluga; Wyndham H Wilson; Louis M Staudt Journal: N Engl J Med Date: 2018-04-12 Impact factor: 91.245
Authors: L Li; P Pongtornpipat; T Tiutan; S L Kendrick; S Park; D O Persky; L M Rimsza; S D Puvvada; J H Schatz Journal: Leukemia Date: 2015-04-17 Impact factor: 11.528
Authors: Adriana E Tron; Matthew A Belmonte; Ammar Adam; Brian M Aquila; Lawrence H Boise; Elisabetta Chiarparin; Justin Cidado; Kevin J Embrey; Eric Gangl; Francis D Gibbons; Gareth P Gregory; David Hargreaves; J Adam Hendricks; Jeffrey W Johannes; Ricky W Johnstone; Steven L Kazmirski; Jason G Kettle; Michelle L Lamb; Shannon M Matulis; Ajay K Nooka; Martin J Packer; Bo Peng; Philip B Rawlins; Daniel W Robbins; Alwin G Schuller; Nancy Su; Wenzhan Yang; Qing Ye; Xiaolan Zheng; J Paul Secrist; Edwin A Clark; David M Wilson; Stephen E Fawell; Alexander W Hird Journal: Nat Commun Date: 2018-12-17 Impact factor: 14.919