Literature DB >> 32063526

Using Informatics Tools to Identify Opportunities for Precision Medicine in Diffuse Large B-cell Lymphoma.

Sharvil P Patel1, R Andrew Harkins2, Michelle J Lee2, Christopher R Flowers3, Jean L Koff4.   

Abstract

INTRODUCTION: Diffuse large B-cell lymphoma (DLBCL) is genetically and clinically heterogeneous. Despite advances in genomic subtyping, standard frontline chemoimmunotherapy has remained unchanged for years. As high-throughput analysis becomes more accessible, characterizing drug-gene interactions in DLBCL could support patient-specific treatment strategies.
MATERIALS AND METHODS: From our systematic literature review, we compiled a comprehensive list of somatic mutations implicated in DLBCL. We extracted reported and primary sequencing data for these mutations and assessed their association with signaling pathways, cell-of-origin subtypes, and clinical outcomes.
RESULTS: Twenty-two targetable mutations present in ≥ 5% of patients with DLBCL were associated with unfavorable outcomes, yielding a predicted population of 31.7% of DLBCL cases with poor-risk disease and candidacy for targeted therapy. A second review identified 256 studies that had characterized the drug-gene interactions for these mutations via in vitro studies, mouse models, and/or clinical trials.
CONCLUSIONS: Our novel approach linking the data from our systematic reviews with informatics tools identified high-risk DLBCL subgroups, DLBCL-specific drug-gene interactions, and potential populations for precision medicine trials.
Copyright © 2020 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  DLBCL; Drug–gene interactions; Genomics

Mesh:

Year:  2019        PMID: 32063526      PMCID: PMC7136133          DOI: 10.1016/j.clml.2019.12.003

Source DB:  PubMed          Journal:  Clin Lymphoma Myeloma Leuk        ISSN: 2152-2669


  53 in total

Review 1.  TP53 dysfunction in diffuse large B-cell lymphoma.

Authors:  Ting-Xun Lu; Ken H Young; Wei Xu; Jian-Yong Li
Journal:  Crit Rev Oncol Hematol       Date:  2015-08-10       Impact factor: 6.312

2.  Precision Medicine for Diffuse Large B-cell Lymphoma.

Authors:  Megan S Lim; Kojo S J Elenitoba-Johnson
Journal:  Clin Cancer Res       Date:  2016-03-17       Impact factor: 12.531

3.  Targeting of BCL2 Family Proteins with ABT-199 and Homoharringtonine Reveals BCL2- and MCL1-Dependent Subgroups of Diffuse Large B-Cell Lymphoma.

Authors:  Magdalena Klanova; Ladislav Andera; Jan Brazina; Jan Svadlenka; Simona Benesova; Jan Soukup; Dana Prukova; Dana Vejmelkova; Radek Jaksa; Karel Helman; Petra Vockova; Lucie Lateckova; Jan Molinsky; Bokang Calvin Lenyeletse Maswabi; Mahmudul Alam; Roman Kodet; Robert Pytlik; Marek Trneny; Pavel Klener
Journal:  Clin Cancer Res       Date:  2015-10-14       Impact factor: 12.531

4.  The BET bromodomain inhibitor CPI203 overcomes resistance to ABT-199 (venetoclax) by downregulation of BFL-1/A1 in in vitro and in vivo models of MYC+/BCL2+ double hit lymphoma.

Authors:  A Esteve-Arenys; J G Valero; A Chamorro-Jorganes; D Gonzalez; V Rodriguez; I Dlouhy; I Salaverria; E Campo; D Colomer; A Martinez; G Rymkiewicz; P Pérez-Galán; A Lopez-Guillermo; G Roué
Journal:  Oncogene       Date:  2018-01-22       Impact factor: 9.867

5.  Safety and activity of BTK inhibitor ibrutinib combined with ofatumumab in chronic lymphocytic leukemia: a phase 1b/2 study.

Authors:  Samantha M Jaglowski; Jeffrey A Jones; Veena Nagar; Joseph M Flynn; Leslie A Andritsos; Kami J Maddocks; Jennifer A Woyach; Kristie A Blum; Michael R Grever; Kelly Smucker; Amy S Ruppert; Nyla A Heerema; Gerard Lozanski; Mona Stefanos; Brian Munneke; Jamie-Sue West; Jutta K Neuenburg; Danelle F James; Nathan Hall; Amy J Johnson; John C Byrd
Journal:  Blood       Date:  2015-06-26       Impact factor: 22.113

6.  Genetic and Functional Drivers of Diffuse Large B Cell Lymphoma.

Authors:  Anupama Reddy; Jenny Zhang; Nicholas S Davis; Andrea B Moffitt; Cassandra L Love; Alexander Waldrop; Sirpa Leppa; Annika Pasanen; Leo Meriranta; Marja-Liisa Karjalainen-Lindsberg; Peter Nørgaard; Mette Pedersen; Anne O Gang; Estrid Høgdall; Tayla B Heavican; Waseem Lone; Javeed Iqbal; Qiu Qin; Guojie Li; So Young Kim; Jane Healy; Kristy L Richards; Yuri Fedoriw; Leon Bernal-Mizrachi; Jean L Koff; Ashley D Staton; Christopher R Flowers; Ora Paltiel; Neta Goldschmidt; Maria Calaminici; Andrew Clear; John Gribben; Evelyn Nguyen; Magdalena B Czader; Sarah L Ondrejka; Angela Collie; Eric D Hsi; Eric Tse; Rex K H Au-Yeung; Yok-Lam Kwong; Gopesh Srivastava; William W L Choi; Andrew M Evens; Monika Pilichowska; Manju Sengar; Nishitha Reddy; Shaoying Li; Amy Chadburn; Leo I Gordon; Elaine S Jaffe; Shawn Levy; Rachel Rempel; Tiffany Tzeng; Lanie E Happ; Tushar Dave; Deepthi Rajagopalan; Jyotishka Datta; David B Dunson; Sandeep S Dave
Journal:  Cell       Date:  2017-10-05       Impact factor: 41.582

7.  Genetics and Pathogenesis of Diffuse Large B-Cell Lymphoma.

Authors:  Roland Schmitz; George W Wright; Da Wei Huang; Calvin A Johnson; James D Phelan; James Q Wang; Sandrine Roulland; Monica Kasbekar; Ryan M Young; Arthur L Shaffer; Daniel J Hodson; Wenming Xiao; Xin Yu; Yandan Yang; Hong Zhao; Weihong Xu; Xuelu Liu; Bin Zhou; Wei Du; Wing C Chan; Elaine S Jaffe; Randy D Gascoyne; Joseph M Connors; Elias Campo; Armando Lopez-Guillermo; Andreas Rosenwald; German Ott; Jan Delabie; Lisa M Rimsza; Kevin Tay Kuang Wei; Andrew D Zelenetz; John P Leonard; Nancy L Bartlett; Bao Tran; Jyoti Shetty; Yongmei Zhao; Dan R Soppet; Stefania Pittaluga; Wyndham H Wilson; Louis M Staudt
Journal:  N Engl J Med       Date:  2018-04-12       Impact factor: 91.245

8.  Synergistic induction of apoptosis in high-risk DLBCL by BCL2 inhibition with ABT-199 combined with pharmacologic loss of MCL1.

Authors:  L Li; P Pongtornpipat; T Tiutan; S L Kendrick; S Park; D O Persky; L M Rimsza; S D Puvvada; J H Schatz
Journal:  Leukemia       Date:  2015-04-17       Impact factor: 11.528

Review 9.  Targeting oncogenic Myc as a strategy for cancer treatment.

Authors:  Hui Chen; Hudan Liu; Guoliang Qing
Journal:  Signal Transduct Target Ther       Date:  2018-02-23

10.  Discovery of Mcl-1-specific inhibitor AZD5991 and preclinical activity in multiple myeloma and acute myeloid leukemia.

Authors:  Adriana E Tron; Matthew A Belmonte; Ammar Adam; Brian M Aquila; Lawrence H Boise; Elisabetta Chiarparin; Justin Cidado; Kevin J Embrey; Eric Gangl; Francis D Gibbons; Gareth P Gregory; David Hargreaves; J Adam Hendricks; Jeffrey W Johannes; Ricky W Johnstone; Steven L Kazmirski; Jason G Kettle; Michelle L Lamb; Shannon M Matulis; Ajay K Nooka; Martin J Packer; Bo Peng; Philip B Rawlins; Daniel W Robbins; Alwin G Schuller; Nancy Su; Wenzhan Yang; Qing Ye; Xiaolan Zheng; J Paul Secrist; Edwin A Clark; David M Wilson; Stephen E Fawell; Alexander W Hird
Journal:  Nat Commun       Date:  2018-12-17       Impact factor: 14.919

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