Literature DB >> 32059456

PNA Clamping in Nucleic Acid Amplification Protocols to Detect Single Nucleotide Mutations Related to Cancer.

Munira F Fouz1, Daniel H Appella1.   

Abstract

This review describes the application of peptide nucleic acids (PNAs) as clamps that prevent nucleic acid amplification of wild-type DNA so that DNA with mutations may be observed. These methods are useful to detect single-nucleotide polymorphisms (SNPs) in cases where there is a small amount of mutated DNA relative to the amount of normal (unmutated/wild-type) DNA. Detecting SNPs arising from mutated DNA can be useful to diagnose various genetic diseases, and is especially important in cancer diagnostics for early detection, proper diagnosis, and monitoring of disease progression. Most examples use PNA clamps to inhibit PCR amplification of wild-type DNA to identify the presence of mutated DNA associated with various types of cancer.

Entities:  

Keywords:  cancer; peptide nucleic acids (PNAs); polymerase chain reaction (PCR); single-nucleotide polymorphism (SNP)

Year:  2020        PMID: 32059456     DOI: 10.3390/molecules25040786

Source DB:  PubMed          Journal:  Molecules        ISSN: 1420-3049            Impact factor:   4.411


  4 in total

1.  Conformational constraints of cyclopentane peptide nucleic acids facilitate tunable binding to DNA.

Authors:  Hongchao Zheng; Istvan Botos; Victor Clausse; Herman Nikolayevskiy; Elizabeth E Rastede; Munira F Fouz; Sharlyn J Mazur; Daniel H Appella
Journal:  Nucleic Acids Res       Date:  2021-01-25       Impact factor: 16.971

2.  Cationic copolymers that enhance wild-type-specific suppression in BNA-clamp PCR and preferentially increase the T m of fully matched complementary DNA and BNA strands.

Authors:  Ami Tachibana; Nahohiro Fujimura; Minoru Takeuchi; Koji Watanabe; Yoko Teruuchi; Tomoaki Uchiki
Journal:  Biol Methods Protoc       Date:  2022-03-30

3.  Peptide Nucleic Acids: Applications in Biomedical Sciences.

Authors:  Eylon Yavin
Journal:  Molecules       Date:  2020-07-22       Impact factor: 4.411

4.  Detection of SF3B1 p.Lys700Glu Mutation by PNA-PCR Clamping in Myelodysplastic Syndromes and Myeloproliferative Neoplasms.

Authors:  Jessica Petiti; Federico Itri; Elisabetta Signorino; Antonio Frolli; Carmen Fava; Marco Armenio; Silvia Marini; Emilia Giugliano; Marco Lo Iacono; Giuseppe Saglio; Daniela Cilloni
Journal:  J Clin Med       Date:  2022-02-25       Impact factor: 4.241

  4 in total

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