Literature DB >> 32057337

Progress and promise of omics for predicting the impacts of climate change on harmful algal blooms.

Gwenn M M Hennon1, Sonya T Dyhrman2.   

Abstract

Climate change is predicted to increase the severity and prevalence of harmful algal blooms (HABs). In the past twenty years, omics techniques such as genomics, transcriptomics, proteomics and metabolomics have transformed that data landscape of many fields including the study of HABs. Advances in technology have facilitated the creation of many publicly available omics datasets that are complementary and shed new light on the mechanisms of HAB formation and toxin production. Genomics have been used to reveal differences in toxicity and nutritional requirements, while transcriptomics and proteomics have been used to explore HAB species responses to environmental stressors, and metabolomics can reveal mechanisms of allelopathy and toxicity. In this review, we explore how omics data may be leveraged to improve predictions of how climate change will impact HAB dynamics. We also highlight important gaps in our knowledge of HAB prediction, which include swimming behaviors, microbial interactions and evolution that can be addressed by future studies with omics tools. Lastly, we discuss approaches to incorporate current omics datasets into predictive numerical models that may enhance HAB prediction in a changing world. With the ever-increasing omics databases, leveraging these data for understanding climate-driven HAB dynamics will be increasingly powerful.
Copyright © 2019 Elsevier B.V. All rights reserved.

Entities:  

Keywords:  Climate change; Cyanobacteria; Genomics; Harmful algae; Metabolomics; Phytoplankton; Proteomics; Transcriptomics

Year:  2019        PMID: 32057337     DOI: 10.1016/j.hal.2019.03.005

Source DB:  PubMed          Journal:  Harmful Algae        ISSN: 1568-9883            Impact factor:   4.273


  6 in total

1.  Linking regional shifts in microbial genome adaptation with surface ocean biogeochemistry.

Authors:  Catherine A Garcia; George I Hagstrom; Alyse A Larkin; Lucas J Ustick; Simon A Levin; Michael W Lomas; Adam C Martiny
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2020-03-23       Impact factor: 6.237

Review 2.  Cyanobacterial community succession and associated cyanotoxin production in hypereutrophic and eutrophic freshwaters.

Authors:  Rahamat Ullah Tanvir; Zhiqiang Hu; Yanyan Zhang; Jingrang Lu
Journal:  Environ Pollut       Date:  2021-08-27       Impact factor: 8.071

Review 3.  Perceived Intensification in Harmful Algal Blooms Is a Wave of Cumulative Threat to the Aquatic Ecosystems.

Authors:  Syed Shabi Ul Hassan Kazmi; Neelamanie Yapa; Samantha C Karunarathna; Nakarin Suwannarach
Journal:  Biology (Basel)       Date:  2022-06-02

4.  Saxitoxin Group Toxins Accumulation Induces Antioxidant Responses in Tissues of Mytilus chilensis, Ameghinomya antiqua, and Concholepas concholepas during a Bloom of Alexandrium pacificum.

Authors:  Javiera Oyaneder-Terrazas; Diego Figueroa; Oscar F Araneda; Carlos García
Journal:  Antioxidants (Basel)       Date:  2022-02-15

5.  A comparative study of metatranscriptomic assessment methods to characterize Microcystis blooms.

Authors:  Helena L Pound; Eric R Gann; Steven W Wilhelm
Journal:  Limnol Oceanogr Methods       Date:  2021-11-08       Impact factor: 3.162

Review 6.  Interfacing Machine Learning and Microbial Omics: A Promising Means to Address Environmental Challenges.

Authors:  James M W R McElhinney; Mary Krystelle Catacutan; Aurelie Mawart; Ayesha Hasan; Jorge Dias
Journal:  Front Microbiol       Date:  2022-04-25       Impact factor: 6.064

  6 in total

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