| Literature DB >> 32049202 |
Haidong Wang1, Chao Wang2, Wenxiu Han3, Chunmei Geng3, Dan Chen3, Bin Wu4, Jun Zhang5, Changshui Wang3, Pei Jiang3.
Abstract
INTRODUCTION: Leptin (LEP) is a peptide hormone that acts via leptin receptor (LEPR) binding. Genetic evidence from different human populations has implicated LEP/LEPR in the pathogenesis of coronary artery disease (CAD), and suggests that certain LEP/LEPR gene polymorphisms may increase the risk of CAD. The aim of this study was to assess two single nucleotide polymorphisms (SNPs) in LEP genes (rs2167270 and rs7799039) and two in LEPR genes (rs6588147, rs1137100) for association with CAD.Entities:
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Year: 2020 PMID: 32049202 PMCID: PMC7083392 DOI: 10.1590/0037-8682-0388-2019
Source DB: PubMed Journal: Rev Soc Bras Med Trop ISSN: 0037-8682 Impact factor: 1.581
PCR Primers targeting LEP/LEPR Gene SNPs in this study
| SNP | Ancestral allele | Primer sequence | Product size |
|---|---|---|---|
| rs2167270 | G | 5’-CCAGGAAAAGCCTGTCACAT-3’ | 250 |
| 3’-CTGGCAGAGCGACTAAAAGC-5’ | |||
| rs7799039 | A | 5’-CCAGGAAAAGCCTGTCACAT-3’ | 250 |
| 3’-CTGGCAGAGCGACTAAAAGC-5’ | |||
| rs6588147 | G | 5’-TTCCACTGGCAAAACACATT-3’ | 186 |
| 3’-CAGCTGGGAAACTTTTCATCAT-5’ | |||
| rs1137100 | G | 5’-ATGTTTTTGGCAACCCAGAG-3’ | 211 |
| 3’-GTAGAGACGGGGTTTCACCA-5’ |
Comparison of Genotypic and Allelic Distribution of LEP rs2167270 and rs7799039, and LEPR rs6588147 and rs1137100 SNPs between all Patients (n=271) and Controls (n =113).
| SNP | Genotype/ allele | Case,(%) | Control,(%) |
| OR (95% CI) |
|
|---|---|---|---|---|---|---|
| rs2167270 | GG | 195 (72.0) | 71 (62.8) | 0.142 (3.903) | 1.00 | Referent |
| GA | 69 (25.5) | 36 (31.9) | 0.698 (0.429-1.135) | 0. 147 | ||
| AA | 7 (2.5) | 6 (5.3) | 0.425 (0.138-1.307) | 0.135 | ||
| GA+AA | 76 (28.0) | 42 (37.2) | 0.077 (3.119) | 0.659 (0.414-1.048) | 0.078 | |
| G | 459 (84.7) | 178 (78.8) | 0.047 (3.958)* | 1.00 | Referent | |
| A | 83 (15.3) | 48 (21.2) | 0.671 (0.452-0.996) | 0.048* | ||
| rs7799039 | AA | 170 (62.7) | 52 (46.0) | 0.010 (9.143)* | 1.00 | Referent |
| AG | 94 (34.7) | 57 (50.5) | 0.504 (0.321-0.793) | 0.003* | ||
| GG | 7 (2.6) | 4 (3.5) | 0.535 (0.151-1.901) | 0.334 | ||
| AG+GG | 103 (37.3) | 61 (54.0) | 0.003 (9.133)* | 0.506 (0.325-0.790) | 0.003* | |
| A | 434 (80.1) | 161 (71.2) | 0.008 (7.134)* | 1.00 | Referent | |
| G | 108 (19.9) | 65 (28.8) | 0.616 (0.431-0.881) | 0.008* | ||
| rs6588147 | GG | 197 (72.7) | 82 (72.6) | 0.958 (0.086) | 1.00 | Referent |
| GA | 68 (25.1) | 29 (25.7) | 0.976 (0.589-1.618) | 0.925 | ||
| AA | 6 (2.2) | 2 (1.8) | 1.249 (0.247-6.316) | 0.788 | ||
| GA+AA | 74 (27.3) | 31 (55.7) | 0.980 (0.001) | 0.994 (0.607-1.625) | 0.980 | |
| G | 462 (85.2) | 193 (85.4) | 0.995 (0.003) | 1.00 | Referent | |
| A | 80 (14.8) | 33 (14.6) | 1.013 (0.653-1.571) | 0.995 | ||
| rs1137100 | GG | 188 (69.4) | 75 (66.4) | 0.837 (0.357) | 1.00 | Referent |
| GA | 75 (27.7) | 34 (30.1) | 0.880 (0.541-1.430) | 0.606 | ||
| GG | 8 (2.9) | 4 (3.5) | 0.798 (0.233-2.729) | 0.719 | ||
| GA+GG | 83 (30.6) | 38 (33.6) | 0.564 (0.333) | 0.871 (0.546-1.391) | 0.564 | |
| G | 451 (83.2) | 184 (81.4) | 0.549 (0.359) | 1.00 | Referent | |
| A | 91 (16.8) | 42 (15.6) | 0.884 (0.590-1.324) | 0.549 |
CI: confidence interval; OR: odds ratio. a P value for genotype and allele frequencies in cases and controls using 2-sided χ2 tests.b P values adjusted by age and gender using logistic regression. *P<0.05.
Comparison of Genotypic and Allelic Distributions of LEP rs2167270 and rs7799039, and LEPR rs6588147 and rs1137100 SNPs Between Male Patients (n=128) and Controls (n =53).
| SNP | Genotype/ allele | Case,(%) | Control,(%) |
| OR (95% CI) |
|
|---|---|---|---|---|---|---|
| rs2167270 | GG | 95 (74.3) | 39 (73.6) | 0.927 (0.056) | 1.00 | Referent |
| GA | 30 (23.4) | 13 (24.5) | 0.947 (0.448-2.006) | 0.888 | ||
| GG | 3 (2.3) | 1 (1.9) | 1.232 (0.124-12.206) | 0.859 | ||
| GA+AA | 33 (25.7) | 14 (26.4) | 0.929 (0.008) | 0.968 (0.467-2.004) | 0.929 | |
| G | 220 (85.9) | 91 (85.8) | 0.708 (0.140) | 1.00 | Referent | |
| A | 36 (14.1) | 15 (14.2) | 1.129 (0.598-2.133) | 0.708 | ||
| rs7799039 | AA | 76 (59.4) | 27 (50.9) | 0.187 (3.349) | 1.00 | Referent |
| AG | 48 (37.5) | 26 (49.1) | 0.656 (0.343-1.255) | 0.202 | ||
| GG | 4 (3.1) | 0 (0.0) | ------- | ------ | ||
| AG+GG | 52 (40.6) | 26 (49.1) | 0.297 (1.087) | 0.711 (0.373-1.353) | 0.298 | |
| A | 200 (78.1) | 80 (75.5) | 0.583 (0.301) | 1.00 | Referent | |
| G | 56 (21.9) | 26 (24.5) | 0.862 (0.506-1.467) | 0.583 | ||
| rs6588147 | GG | 94 (73.4) | 39 (73.6) | 0.982 (0.037) | 1.00 | Referent |
| GA | 31 (24.3) | 13 (24.5) | 0.989 (0.469-2.089) | 0.978 | ||
| AA | 3 (2.3) | 1 (1.9) | 1.245 (0.126-12.337) | 0.852 | ||
| GA+AA | 34 (26.6) | 14 (26.4) | 0.984 (0.000) | 1.008 (0.488-2.082) | 0.984 | |
| G | 219 (85.5) | 91 (85.8) | 0.941 (0.004) | 1.00 | Referent | |
| A | 37 (14.5) | 15 (14.2) | 1.025 (0.536-1.959) | 0.941 | ||
| rs1137100 | GG | 89 (69.5) | 38 (71.7) | 0.273 (2.599) | 1.00 | Referent |
| GA | 33 (25.8) | 15 (28.3) | 0.919 (0.458-1.928) | 0.864 | ||
| GG | 6 (4.7) | 0 (0.0) | ------ | ---- | ||
| GA+GG | 39 (30.5) | 15 (28.3) | 0.772 (0.084) | 1.110 (0.548-2.250) | 0.772 | |
| G | 211 (82.4) | 91 (85.8) | 0.425 (0.637) | 1.00 | Referent | |
| A | 45 (17.6) | 15 (14.2) | 1.294 (0.686-2.439) | 0.426 |
CI: confidence interval; OR: odds ratio. a P value for genotype and allele frequencies in cases and controls using 2-sided χ2 test.b P values adjusted by age using logistic regression.
Comparison of Genotypic and Allelic Distribution of LEP rs2167270 and rs7799039, and LEPR rs6588147 and rs1137100 SNPs Between Female Patients (n=143) and Controls (n =60).
| SNP | Genotype/ allele | Case (%) | Control (%) |
| OR (95% CI) |
|
|---|---|---|---|---|---|---|
| rs2167270 | GG | 100 (70.0) | 32 (53.3) | 0.041 (6.405)* | 1.00 | Referent |
| GA | 39 (27.2) | 23 (38.4) | 0.543 (0.283-1.041) | 0.066 | ||
| AA | 4 (2.8) | 5 (8.3) | 0.256 (0.065-1.011) | 0.052 | ||
| GA+AA | 43 (30.3) | 28 (46.7) | 0.024 (5.119)* | 0.491 (0.264-0.914) | 0.025* | |
| G | 239 (83.6) | 87 (72.5) | 0.011 (6.543)* | 1.00 | Referent | |
| A | 47 (16.4) | 33 (27.5) | 0.518 (0.312-0.862) | 0.011* | ||
| rs7799039 | AA | 94 (65.7) | 25 (41.7) | 0.004 (0.972)* | 1.00 | Referent |
| AG | 46 (32.2) | 31 (51.7) | 0.395 (0.209-0.744) | 0.004* | ||
| GG | 3 (2.1) | 4 (6.6) | 0.199 (0.042-0.950) | 0.043* | ||
| AG+GG | 49 (34.3) | 35 (58.3) | 0.001 (10.093)* | 0.372 (0.201-0.691) | 0.002* | |
| A | 234 (81.8) | 81 (67.5) | 0.002 (9.965)* | 1.00 | Referent | |
| G | 52 (18.2) | 39 (32.5) | 0.462 (0.284-0.750) | 0.002* | ||
| rs6588147 | GG | 103 (72.0) | 43 (71.7) | 0.975 (0.051) | 1.00 | Referent |
| GA | 37 (25.9) | 16 (26.6) | 1.375 (0.750-2.523) | 0.920 | ||
| AA | 3 (2.1) | 1 (1.7) | 0.904 (0.373-2.189) | 0.847 | ||
| GA+AA | 40 (28.0) | 17 (28.3) | 0.958 (0.004) | 0.982 (0.503-1.919) | 0.958 | |
| G | 243 (85.0) | 102 (85.0) | 0.993 (0.000) | 1.00 | Referent | |
| A | 43 (15.0) | 18 (15.0) | 1.003 (0.552-1.821) | 0.993 | ||
| rs1137100 | GG | 99 (69.2) | 37 (61.6) | 0.111 (4.404) | 1.00 | Referent |
| GA | 42 (29.4) | 19 (31.7) | 0.826 (0.427-1.599) | 0.571 | ||
| GG | 2 (1.4) | 4 (6.7) | 0.187 (0.033-1.063) | 0.059 | ||
| GA+GG | 44 (30.8) | 23 (38.3) | 0.296 (1.094) | 0.715 (0.381-1.343) | 0.297 | |
| G | 240 (83.9) | 93 (77.5) | 0.125 (2.360) | 1.00 | Referent | |
| A | 46 (16.1) | 27 (22.5) | 0.660 (0.388-1.124) | 0.126 |
CI: confidence interval; OR: odds ratio. a P value for genotype and allele frequencies in cases and controls using 2-sided χ2 test. b P values adjusted by age using logistic regression. *P< 0.05.
Genotypic/Allele Distribution of LEP rs2167270 and rs7799039, and LEPR rs6588147 and rs1137100 SNPs Between Coronary Artery Disease patients with (n=210) and Coronary Artery Disease Patients without Hypertension (n=61), and Healthy Controls (n =113).
| SNP | Genotype/Allele | CAD+H+ (%) | CAD+H- (%) | Control,(%) |
| |||
|---|---|---|---|---|---|---|---|---|
| CAD+H+
| CAD+H-
| |||||||
| rs2167270 | GG | 152 (73.4) | 43 (70.5) | 71 (62.8) | 0.136 | Referent | 0.568 | Referent |
| GA | 53 (25.2) | 16 (26.2) | 36 (31.9) | 0.148 | 0.386 | |||
| GG | 5 (2.4) | 2 (3.3) | 6 (5.3) | 0.118 | 0.471 | |||
| GA+AA | 58 (27.6) | 18 (29.5) | 42 (37.2) | 0.077 | 0.310 | |||
| G | 357 (85.0) | 102 (83.6) | 178 (78.8) | Referent | Referent | |||
| A | 63 (15.0) | 20 (16.4) | 48 (21.2) | 0.045* | 0.277 | |||
| rs7799039 | AA | 131 (62.4) | 39 (63.9) | 52 (46.0) | 0.018* | Referent | 0.074 | Referent |
| AG | 73 (34.8) | 21 (34.5) | 57 (50.5) | 0.005* | 0.031* | |||
| GG | 6 (2.8) | 1 (1.6) | 4 (3.5) | 0.432 | 0.313 | |||
| AG+GG | 79 (37.6) | 22 (36.1) | 61 (54.0) | 0.005* | 0.024* | |||
| A | 335 (79.8) | 99 (81.1) | 161 (71.2) | Referent | Referent | |||
| G | 85 (20.2) | 23 (18.9) | 65 (28.8) | 0.014* | 0.042* | |||
| rs6588147 | GG | 148 (70.5) | 49 (80.3) | 82 (72.6) | 0.890 | Referent | 0.516 | Referent |
| GA | 57 (27.1) | 11 (18.1) | 29 (25.7) | 0.749 | 0.251 | |||
| AA | 5 (2.4) | 1 (1.6) | 2 (1.8) | 0.700 | 0.885 | |||
| GA+AA | 62 (29.5) | 12 (19.7) | 31 (55.7) | 0.692 | 0.257 | |||
| G | 353 (84.0) | 109 (89.3) | 193 (85.4) | Referent | Referent | |||
| A | 67 (16.0) | 13 (10.7) | 33 (14.6) | 0.651 | 0.300 | |||
| rs1137100 | AA | 141 (67.1) | 47 (77.0) | 75 (66.4) | 0.976 | Referent | 0.171 | Referent |
| GA | 61 (29.1) | 14 (23.0) | 34 (30.1) | 0.856 | 0.252 | |||
| GG | 8 (3.8) | 0 (0.0) | 4 (3.5) | 0.922 | 0.117 | |||
| GA+GG | 69 (32.9) | 14 (23.0) | 38 (33.6) | 0.888 | 0.142 | |||
| G | 343 (81.7) | 108 (88.5) | 184 (81.4) | Referent | Referent | |||
| A | 77 (18.3) | 14 (11.5) | 42 (18.6) | 0.938 | 0.085 | |||
P values for genotype frequencies in cases and controls using 2-sided χ2 test. *P< 0.05.
CAD+H+ for Coronary Artery Disease Patients with Hypertension.
CAD+H- for Coronary Artery Disease Patients without Hypertension.