| Literature DB >> 32049048 |
Samirkumar B Amin1, Kevin J Anderson1, C Elizabeth Boudreau2, Emmanuel Martinez-Ledesma3, Emre Kocakavuk4, Kevin C Johnson1, Floris P Barthel1, Frederick S Varn1, Cynthia Kassab5, Xiaoyang Ling5, Hoon Kim1, Mary Barter6, Ching C Lau7, Chew Yee Ngan1, Margaret Chapman1, Jennifer W Koehler8, James P Long9, Andrew D Miller10, C Ryan Miller11, Brian F Porter12, Daniel R Rissi13, Christina Mazcko14, Amy K LeBlanc14, Peter J Dickinson15, Rebecca A Packer16, Amanda R Taylor17, John H Rossmeisl18, Kevin D Woolard15, Amy B Heimberger5, Jonathan M Levine2, Roel G W Verhaak19.
Abstract
Sporadic gliomas in companion dogs provide a window on the interaction between tumorigenic mechanisms and host environment. We compared the molecular profiles of canine gliomas with those of human pediatric and adult gliomas to characterize evolutionarily conserved mammalian mutational processes in gliomagenesis. Employing whole-genome, exome, transcriptome, and methylation sequencing of 83 canine gliomas, we found alterations shared between canine and human gliomas such as the receptor tyrosine kinases, TP53 and cell-cycle pathways, and IDH1 R132. Canine gliomas showed high similarity with human pediatric gliomas per robust aneuploidy, mutational rates, relative timing of mutations, and DNA-methylation patterns. Our cross-species comparative genomic analysis provides unique insights into glioma etiology and the chronology of glioma-causing somatic alterations.Entities:
Keywords: adult glioma; canine glioma; comparative genomics; comparative oncology; computational biology; life history; mutagenesis; pediatric glioma
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Year: 2020 PMID: 32049048 PMCID: PMC7132629 DOI: 10.1016/j.ccell.2020.01.004
Source DB: PubMed Journal: Cancer Cell ISSN: 1535-6108 Impact factor: 31.743