Literature DB >> 32049048

Comparative Molecular Life History of Spontaneous Canine and Human Gliomas.

Samirkumar B Amin1, Kevin J Anderson1, C Elizabeth Boudreau2, Emmanuel Martinez-Ledesma3, Emre Kocakavuk4, Kevin C Johnson1, Floris P Barthel1, Frederick S Varn1, Cynthia Kassab5, Xiaoyang Ling5, Hoon Kim1, Mary Barter6, Ching C Lau7, Chew Yee Ngan1, Margaret Chapman1, Jennifer W Koehler8, James P Long9, Andrew D Miller10, C Ryan Miller11, Brian F Porter12, Daniel R Rissi13, Christina Mazcko14, Amy K LeBlanc14, Peter J Dickinson15, Rebecca A Packer16, Amanda R Taylor17, John H Rossmeisl18, Kevin D Woolard15, Amy B Heimberger5, Jonathan M Levine2, Roel G W Verhaak19.   

Abstract

Sporadic gliomas in companion dogs provide a window on the interaction between tumorigenic mechanisms and host environment. We compared the molecular profiles of canine gliomas with those of human pediatric and adult gliomas to characterize evolutionarily conserved mammalian mutational processes in gliomagenesis. Employing whole-genome, exome, transcriptome, and methylation sequencing of 83 canine gliomas, we found alterations shared between canine and human gliomas such as the receptor tyrosine kinases, TP53 and cell-cycle pathways, and IDH1 R132. Canine gliomas showed high similarity with human pediatric gliomas per robust aneuploidy, mutational rates, relative timing of mutations, and DNA-methylation patterns. Our cross-species comparative genomic analysis provides unique insights into glioma etiology and the chronology of glioma-causing somatic alterations.
Copyright © 2020 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  adult glioma; canine glioma; comparative genomics; comparative oncology; computational biology; life history; mutagenesis; pediatric glioma

Mesh:

Substances:

Year:  2020        PMID: 32049048      PMCID: PMC7132629          DOI: 10.1016/j.ccell.2020.01.004

Source DB:  PubMed          Journal:  Cancer Cell        ISSN: 1535-6108            Impact factor:   31.743


  97 in total

Review 1.  Cancer: a CINful evolution.

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2.  A wellness model for the geriatric population.

Authors:  I Fleshner; N L Chernett
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Authors:  Rajesh C Rao; Yali Dou
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5.  The landscape of somatic mutations in epigenetic regulators across 1,000 paediatric cancer genomes.

Authors:  Robert Huether; Li Dong; Xiang Chen; Gang Wu; Matthew Parker; Lei Wei; Jing Ma; Michael N Edmonson; Erin K Hedlund; Michael C Rusch; Sheila A Shurtleff; Heather L Mulder; Kristy Boggs; Bhavin Vadordaria; Jinjun Cheng; Donald Yergeau; Guangchun Song; Jared Becksfort; Gordon Lemmon; Catherine Weber; Zhongling Cai; Jinjun Dang; Michael Walsh; Amanda L Gedman; Zachary Faber; John Easton; Tanja Gruber; Richard W Kriwacki; Janet F Partridge; Li Ding; Richard K Wilson; Elaine R Mardis; Charles G Mullighan; Richard J Gilbertson; Suzanne J Baker; Gerard Zambetti; David W Ellison; Jinghui Zhang; James R Downing
Journal:  Nat Commun       Date:  2014-04-08       Impact factor: 14.919

Review 6.  Evolution of cancer suppression as revealed by mammalian comparative genomics.

Authors:  Marc Tollis; Joshua D Schiffman; Amy M Boddy
Journal:  Curr Opin Genet Dev       Date:  2017-02-02       Impact factor: 5.578

7.  Palimpsest: an R package for studying mutational and structural variant signatures along clonal evolution in cancer.

Authors:  Jayendra Shinde; Quentin Bayard; Sandrine Imbeaud; Théo Z Hirsch; Feng Liu; Victor Renault; Jessica Zucman-Rossi; Eric Letouzé
Journal:  Bioinformatics       Date:  2018-10-01       Impact factor: 6.937

8.  PhyloWGS: reconstructing subclonal composition and evolution from whole-genome sequencing of tumors.

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9.  Enhancer evolution across 20 mammalian species.

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10.  The evolutionary history of 2,658 cancers.

Authors:  Moritz Gerstung; Clemency Jolly; Ignaty Leshchiner; Stefan C Dentro; Santiago Gonzalez; Daniel Rosebrock; Thomas J Mitchell; Yulia Rubanova; Pavana Anur; Kaixian Yu; Maxime Tarabichi; Amit Deshwar; Jeff Wintersinger; Kortine Kleinheinz; Ignacio Vázquez-García; Kerstin Haase; Lara Jerman; Subhajit Sengupta; Geoff Macintyre; Salem Malikic; Nilgun Donmez; Dimitri G Livitz; Marek Cmero; Jonas Demeulemeester; Steven Schumacher; Yu Fan; Xiaotong Yao; Juhee Lee; Matthias Schlesner; Paul C Boutros; David D Bowtell; Hongtu Zhu; Gad Getz; Marcin Imielinski; Rameen Beroukhim; S Cenk Sahinalp; Yuan Ji; Martin Peifer; Florian Markowetz; Ville Mustonen; Ke Yuan; Wenyi Wang; Quaid D Morris; Paul T Spellman; David C Wedge; Peter Van Loo
Journal:  Nature       Date:  2020-02-06       Impact factor: 49.962

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  13 in total

1.  Intratumoral Delivery of STING Agonist Results in Clinical Responses in Canine Glioblastoma.

Authors:  C Elizabeth Boudreau; Hinda Najem; Martina Ott; Craig Horbinski; Dexing Fang; Chase M DeRay; Jonathan M Levine; Michael A Curran; Amy B Heimberger
Journal:  Clin Cancer Res       Date:  2021-08-25       Impact factor: 12.531

2.  The genomic landscape of canine diffuse large B-cell lymphoma identifies distinct subtypes with clinical and therapeutic implications.

Authors:  Diana Giannuzzi; Laura Marconato; Antonella Fanelli; Luca Licenziato; Raffaella De Maria; Andrea Rinaldi; Luca Rotta; Nicole Rouquet; Giovanni Birolo; Piero Fariselli; Afua A Mensah; Francesco Bertoni; Luca Aresu
Journal:  Lab Anim (NY)       Date:  2022-06-20       Impact factor: 12.625

3.  Structural variants shape driver combinations and outcomes in pediatric high-grade glioma.

Authors:  Frank P B Dubois; Ofer Shapira; Noah F Greenwald; Travis Zack; Jeremiah Wala; Jessica W Tsai; Alexander Crane; Audrey Baguette; Djihad Hadjadj; Ashot S Harutyunyan; Kiran H Kumar; Mirjam Blattner-Johnson; Jayne Vogelzang; Cecilia Sousa; Kyung Shin Kang; Claire Sinai; Dayle K Wang; Prasidda Khadka; Kathleen Lewis; Lan Nguyen; Hayley Malkin; Patricia Ho; Ryan O'Rourke; Shu Zhang; Rose Gold; Davy Deng; Jonathan Serrano; Matija Snuderl; Chris Jones; Karen D Wright; Susan N Chi; Jacques Grill; Claudia L Kleinman; Liliana C Goumnerova; Nada Jabado; David T W Jones; Mark W Kieran; Keith L Ligon; Rameen Beroukhim; Pratiti Bandopadhayay
Journal:  Nat Cancer       Date:  2022-07-04

Review 4.  Pediatric glioblastoma: mechanisms of immune evasion and potential therapeutic opportunities.

Authors:  Rosy Njonkou; Christopher M Jackson; Graeme F Woodworth; David S Hersh
Journal:  Cancer Immunol Immunother       Date:  2022-01-12       Impact factor: 6.630

Review 5.  Pre-clinical tumor models of primary brain tumors: Challenges and opportunities.

Authors:  Farhana Akter; Brennan Simon; Nadine Leonie de Boer; Navid Redjal; Hiroaki Wakimoto; Khalid Shah
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6.  Hydrogen deuterium exchange mass spectrometry identifies the dominant paratope in CD20 antigen binding to the NCD1.2 monoclonal antibody.

Authors:  Lukas Uhrik; Lenka Hernychova; Petr Muller; Umesh Kalathiya; Malgorzata M Lisowska; Mikolaj Kocikowski; Maciej Parys; Jakub Faktor; Marta Nekulova; Chris Nortcliffe; Pavlina Zatloukalova; Barbara Ruetgen; Robin Fahraeus; Kathryn L Ball; David J Argyle; Borivoj Vojtesek; Ted R Hupp
Journal:  Biochem J       Date:  2021-01-15       Impact factor: 3.857

7.  Glioma-associated microglia/macrophages augment tumorigenicity in canine astrocytoma, a naturally occurring model of human glioma.

Authors:  Ryan Toedebusch; Ana Cristina Grodzki; Peter J Dickinson; Kevin Woolard; Nicole Vinson; Beverly Sturges; John Snyder; Chai-Fei Li; Ori Nagasaka; Blaire Consales; Karen Vernau; Marguerite Knipe; Vishal Murthy; Pamela J Lein; Christine M Toedebusch
Journal:  Neurooncol Adv       Date:  2021-05-04

8.  Clinical features, diagnosis, and survival analysis of dogs with glioma.

Authors:  Roberto José-López; Rodrigo Gutierrez-Quintana; Cristian de la Fuente; Edgar G Manzanilla; Anna Suñol; Dolors Pi Castro; Sonia Añor; Daniel Sánchez-Masian; Francisco Fernández-Flores; Emanuele Ricci; Katia Marioni-Henry; Joan Mascort; Lara A Matiasek; Kaspar Matiasek; Paul M Brennan; Martí Pumarola
Journal:  J Vet Intern Med       Date:  2021-06-12       Impact factor: 3.175

9.  Meningeal B Cell Clusters Correlate with Submeningeal Pathology in a Natural Model of Multiple Sclerosis.

Authors:  Molly E Church; Guadalupe Ceja; Megan McGeehan; Miles C Miller; Priscilla Farias; Melissa D Sánchez; Gary P Swain; Charles-Antoine Assenmacher; Edward G Stopa; Charles H Vite; Amit Bar-Or; Jorge I Alvarez
Journal:  J Immunol       Date:  2021-06-23       Impact factor: 5.426

10.  Canine tumor mutational burden is correlated with TP53 mutation across tumor types and breeds.

Authors:  Burair A Alsaihati; Kun-Lin Ho; Joshua Watson; Yuan Feng; Tianfang Wang; Kevin K Dobbin; Shaying Zhao
Journal:  Nat Commun       Date:  2021-08-03       Impact factor: 14.919

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