Literature DB >> 32048048

Identification of the molecular components of a putative Jasus edwardsii (Crustacea; Decapoda; Achelata) circadian signaling system.

Andrew E Christie1.   

Abstract

Like all organisms, members of the crustacean order Decapoda must coordinate their physiology and behavior to accommodate recurring patterns of environmental change. Genetically encoded biological clocks are responsible, at least in part, for the proper timing of these organism-environment patternings. While biological clocks cycling on a wide range of timescales have been identified, the circadian signaling system, which serves to coordinate physiological/behavioral events to the solar day, is perhaps the best known and most thoroughly investigated. While many circadian patterns of physiology/behavior have been documented in decapods, few data exist concerning the identity of circadian genes/proteins in members of this taxon. In fact, large collections of circadian genes/proteins have been described from just a handful of decapod species. Here, a publicly accessible transcriptome, produced from tissues that included the nervous system (brain and eyestalk ganglia), was used to identify the molecular components of a circadian signaling system for rock lobster, Jasus edwardsii, a member of the decapod infraorder Achelata. Complete sets of core clock (those involved in the establishment of the molecular feedback loop that allows for ~ 24-h cyclical timing), clock-associated (those involved in modulation of core clock output), and clock input pathway (those that allow for synchronization of the core clock to the solar day) genes/proteins are reported. This is the first description of a putative circadian signaling system from any member of the infraorder Achelata, and as such, expands the decapod taxa for which complete complements of putative circadian genes/proteins have been identified.

Entities:  

Keywords:  Bioinformatics; Circadian signaling; Transcriptome shotgun assembly (TSA)

Mesh:

Year:  2020        PMID: 32048048     DOI: 10.1007/s10158-020-0236-8

Source DB:  PubMed          Journal:  Invert Neurosci        ISSN: 1354-2516


  23 in total

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Authors:  Tracy A Ziegler; Jonathan H Cohen; Richard B Forward
Journal:  Biol Bull       Date:  2010-12       Impact factor: 1.818

2.  Circadian signaling in Homarus americanus: Region-specific de novo assembled transcriptomes show that both the brain and eyestalk ganglia possess the molecular components of a putative clock system.

Authors:  Andrew E Christie; Andy Yu; Micah G Pascual; Vittoria Roncalli; Matthew C Cieslak; Amanda N Warner; Tess J Lameyer; Meredith E Stanhope; Patsy S Dickinson; J Joe Hull
Journal:  Mar Genomics       Date:  2018-04-12       Impact factor: 1.710

3.  Prediction of a neuropeptidome for the eyestalk ganglia of the lobster Homarus americanus using a tissue-specific de novo assembled transcriptome.

Authors:  Andrew E Christie; Vittoria Roncalli; Matthew C Cieslak; Micah G Pascual; Andy Yu; Tess J Lameyer; Meredith E Stanhope; Patsy S Dickinson
Journal:  Gen Comp Endocrinol       Date:  2016-11-05       Impact factor: 2.822

Review 4.  Molecular genetic analysis of circadian timekeeping in Drosophila.

Authors:  Paul E Hardin
Journal:  Adv Genet       Date:  2011       Impact factor: 1.944

Review 5.  Circadian organization of behavior and physiology in Drosophila.

Authors:  Ravi Allada; Brian Y Chung
Journal:  Annu Rev Physiol       Date:  2010       Impact factor: 19.318

6.  MAFFT multiple sequence alignment software version 7: improvements in performance and usability.

Authors:  Kazutaka Katoh; Daron M Standley
Journal:  Mol Biol Evol       Date:  2013-01-16       Impact factor: 16.240

7.  Temporal variation in the specific dynamic action of juvenile New Zealand rock lobsters, Jasus edwardsii.

Authors:  Craig A Radford; Islay D Marsden; William Davison
Journal:  Comp Biochem Physiol A Mol Integr Physiol       Date:  2004-09       Impact factor: 2.320

8.  Prediction of the protein components of a putative Calanus finmarchicus (Crustacea, Copepoda) circadian signaling system using a de novo assembled transcriptome.

Authors:  Andrew E Christie; Tiana M Fontanilla; Katherine T Nesbit; Petra H Lenz
Journal:  Comp Biochem Physiol Part D Genomics Proteomics       Date:  2013-05-06       Impact factor: 2.674

9.  Identification and temporal expression of putative circadian clock transcripts in the amphipod crustacean Talitrus saltator.

Authors:  Joseph F O'Grady; Laura S Hoelters; Martin T Swain; David C Wilcockson
Journal:  PeerJ       Date:  2016-10-05       Impact factor: 2.984

Review 10.  Circadian light-input pathways in Drosophila.

Authors:  Taishi Yoshii; Christiane Hermann-Luibl; Charlotte Helfrich-Förster
Journal:  Commun Integr Biol       Date:  2015-12-04
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