| Literature DB >> 32045823 |
Simona Bianco1, Andrea M Chiariello2, Mattia Conte2, Andrea Esposito2, Luca Fiorillo2, Francesco Musella2, Mario Nicodemi3.
Abstract
Microscopy and sequencing-based technologies are providing increasing insights into chromatin architecture. Nevertheless, a full comprehension of chromosome folding and its link with vital cell functions is far from accomplished at the molecular level. Recent theoretical and computational approaches are providing important support to experiments to dissect the three-dimensional structure of chromosomes and its organizational mechanisms. Here, we review, in particular, the String&Binders polymer model of chromatin that describes the textbook scenario where contacts between distal DNA sites are established by cognate binders. It has been shown to recapitulate key features of chromosome folding and to be able at predicting how phenotypes causing structural variants rewire the interactions between genes and regulators.Keywords: Chromatin organization; EPHA4; Loop extrusion model; Pitx1; Polymer models; SBS model; Statistical mechanics; Structural variants
Mesh:
Substances:
Year: 2020 PMID: 32045823 DOI: 10.1016/j.ceb.2020.01.002
Source DB: PubMed Journal: Curr Opin Cell Biol ISSN: 0955-0674 Impact factor: 8.382