Literature DB >> 32042806

The application of single-cell sequencing technology in the diagnosis and treatment of hepatocellular carcinoma.

Kai Kang1, Xuezhu Wang1, Chan Meng2, Li He3, Xinting Sang1, Yongchang Zheng1, Haifeng Xu1.   

Abstract

Single-cell sequencing technology refers to the sequencing of the genome, transcriptome and epigenome in one single cell. Comparing to traditional histology, single-cell sequencing can reveal the genetic heterogeneity among different cells. Due to the complex pathogenesis and various pathological types of hepatocellular carcinoma (HCC), studies on the heterogeneity of tumor cells confer improvement for its clinical diagnosis, treatment and prognosis. This article summarizes the principal basis and development of single-cell sequencing technology, as well as its increasing application in the field of HCC. 2019 Annals of Translational Medicine. All rights reserved.

Entities:  

Keywords:  Single-cell sequencing; hepatocellular carcinoma (HCC); heterogeneity

Year:  2019        PMID: 32042806      PMCID: PMC6990044          DOI: 10.21037/atm.2019.11.116

Source DB:  PubMed          Journal:  Ann Transl Med        ISSN: 2305-5839


  65 in total

Review 1.  Single-cell genome sequencing: current state of the science.

Authors:  Charles Gawad; Winston Koh; Stephen R Quake
Journal:  Nat Rev Genet       Date:  2016-01-25       Impact factor: 53.242

2.  Comparative Analysis of Single-Cell RNA Sequencing Methods.

Authors:  Christoph Ziegenhain; Beate Vieth; Swati Parekh; Björn Reinius; Amy Guillaumet-Adkins; Martha Smets; Heinrich Leonhardt; Holger Heyn; Ines Hellmann; Wolfgang Enard
Journal:  Mol Cell       Date:  2017-02-16       Impact factor: 17.970

Review 3.  Immunological landscape and immunotherapy of hepatocellular carcinoma.

Authors:  Jesús Prieto; Ignacio Melero; Bruno Sangro
Journal:  Nat Rev Gastroenterol Hepatol       Date:  2015-10-20       Impact factor: 46.802

4.  Metastasis results from preexisting variant cells within a malignant tumor.

Authors:  I J Fidler; M L Kripke
Journal:  Science       Date:  1977-08-26       Impact factor: 47.728

Review 5.  The evolving epidemiology of hepatocellular carcinoma: a global perspective.

Authors:  Michael C Wallace; David Preen; Gary P Jeffrey; Leon A Adams
Journal:  Expert Rev Gastroenterol Hepatol       Date:  2015-04-01       Impact factor: 3.869

6.  Optofluidic cell selection from complex microbial communities for single-genome analysis.

Authors:  Zachary C Landry; Stephen J Giovanonni; Stephen R Quake; Paul C Blainey
Journal:  Methods Enzymol       Date:  2013       Impact factor: 1.600

7.  Single-cell dissection of transcriptional heterogeneity in human colon tumors.

Authors:  Piero Dalerba; Tomer Kalisky; Debashis Sahoo; Pradeep S Rajendran; Michael E Rothenberg; Anne A Leyrat; Sopheak Sim; Jennifer Okamoto; Darius M Johnston; Dalong Qian; Maider Zabala; Janet Bueno; Norma F Neff; Jianbin Wang; Andrew A Shelton; Brendan Visser; Shigeo Hisamori; Yohei Shimono; Marc van de Wetering; Hans Clevers; Michael F Clarke; Stephen R Quake
Journal:  Nat Biotechnol       Date:  2011-11-13       Impact factor: 54.908

8.  Single-cell methylome landscapes of mouse embryonic stem cells and early embryos analyzed using reduced representation bisulfite sequencing.

Authors:  Hongshan Guo; Ping Zhu; Xinglong Wu; Xianlong Li; Lu Wen; Fuchou Tang
Journal:  Genome Res       Date:  2013-10-31       Impact factor: 9.043

9.  Single-cell transcriptome conservation in cryopreserved cells and tissues.

Authors:  Amy Guillaumet-Adkins; Gustavo Rodríguez-Esteban; Elisabetta Mereu; Maria Mendez-Lago; Diego A Jaitin; Alberto Villanueva; August Vidal; Alex Martinez-Marti; Enriqueta Felip; Ana Vivancos; Hadas Keren-Shaul; Simon Heath; Marta Gut; Ido Amit; Ivo Gut; Holger Heyn
Journal:  Genome Biol       Date:  2017-03-01       Impact factor: 13.583

10.  Integrative single-cell analysis of transcriptome, DNA methylome and chromatin accessibility in mouse oocytes.

Authors:  Chan Gu; Shanling Liu; Qihong Wu; Lin Zhang; Fan Guo
Journal:  Cell Res       Date:  2018-12-18       Impact factor: 25.617

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  3 in total

Review 1.  An Overview on Single-Cell Technology for Hepatocellular Carcinoma Diagnosis.

Authors:  Sheik Aliya; Hoomin Lee; Munirah Alhammadi; Reddicherla Umapathi; Yun Suk Huh
Journal:  Int J Mol Sci       Date:  2022-01-26       Impact factor: 5.923

Review 2.  Applying Single-Cell Analysis to Gonadogenesis and DSDs (Disorders/Differences of Sex Development).

Authors:  Martin A Estermann; Craig A Smith
Journal:  Int J Mol Sci       Date:  2020-09-10       Impact factor: 5.923

3.  Single-Cell RNA Sequencing Reveals the Role of Phosphorylation-Related Genes in Hepatocellular Carcinoma Stem Cells.

Authors:  Fuwen Yao; Yongqiang Zhan; Changzheng Li; Ying Lu; Jiao Chen; Jing Deng; Zijing Wu; Qi Li; Yi'an Song; Binhua Chen; Jinjun Chen; Kuifeng Tian; Zuhui Pu; Yong Ni; Lisha Mou
Journal:  Front Cell Dev Biol       Date:  2022-01-04
  3 in total

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