Literature DB >> 32040931

Temperature, Dynamics, and Enzyme-Catalyzed Reaction Rates.

Vickery L Arcus1, Adrian J Mulholland2.   

Abstract

We review the adaptations of enzyme activity to different temperatures. Psychrophilic (cold-adapted) enzymes show significantly different activation parameters (lower activation enthalpies and entropies) from their mesophilic counterparts. Furthermore, there is increasing evidence that the temperature dependence of many enzyme-catalyzed reactions is more complex than is widely believed. Many enzymes show curvature in plots of activity versus temperature that is not accounted for by denaturation or unfolding. This is explained by macromolecular rate theory: A negative activation heat capacity for the rate-limiting chemical step leads directly to predictions of temperature optima; both entropy and enthalpy are temperature dependent. Fluctuations in the transition state ensemble are reduced compared to the ground state. We show how investigations combining experiment with molecular simulation are revealing fundamental details of enzyme thermoadaptation that are relevant for understanding aspects of enzyme evolution. Simulations can calculate relevant thermodynamic properties (such as activation enthalpies, entropies, and heat capacities) and reveal the molecular mechanisms underlying experimentally observed behavior.

Keywords:  enthalpy–entropy trade-off; enzyme catalysis; enzyme evolution; macromolecular rate theory; molecular dynamics; transition state theory

Mesh:

Substances:

Year:  2020        PMID: 32040931     DOI: 10.1146/annurev-biophys-121219-081520

Source DB:  PubMed          Journal:  Annu Rev Biophys        ISSN: 1936-122X            Impact factor:   12.981


  8 in total

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Journal:  Microorganisms       Date:  2022-06-06

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7.  Temperature-dependent hydrogen deuterium exchange shows impact of analog binding on adenosine deaminase flexibility but not embedded thermal networks.

Authors:  Shuaihua Gao; Wenju Zhang; Samuel L Barrow; Anthony T Iavarone; Judith P Klinman
Journal:  J Biol Chem       Date:  2022-08-04       Impact factor: 5.486

8.  Chemical Mapping Exposes the Importance of Active Site Interactions in Governing the Temperature Dependence of Enzyme Turnover.

Authors:  Samuel D Winter; Hannah B L Jones; Dora M Răsădean; Rory M Crean; Michael J Danson; G Dan Pantoş; Gergely Katona; Erica Prentice; Vickery L Arcus; Marc W van der Kamp; Christopher R Pudney
Journal:  ACS Catal       Date:  2021-11-29       Impact factor: 13.084

  8 in total

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