Literature DB >> 32040647

Deep learning workflow in radiology: a primer.

Emmanuel Montagnon1, Milena Cerny1, Alexandre Cadrin-Chênevert2, Vincent Hamilton1, Thomas Derennes1, André Ilinca1, Franck Vandenbroucke-Menu3, Simon Turcotte1,3, Samuel Kadoury4, An Tang1,5.   

Abstract

Interest for deep learning in radiology has increased tremendously in the past decade due to the high achievable performance for various computer vision tasks such as detection, segmentation, classification, monitoring, and prediction. This article provides step-by-step practical guidance for conducting a project that involves deep learning in radiology, from defining specifications, to deployment and scaling. Specifically, the objectives of this article are to provide an overview of clinical use cases of deep learning, describe the composition of multi-disciplinary team, and summarize current approaches to patient, data, model, and hardware selection. Key ideas will be illustrated by examples from a prototypical project on imaging of colorectal liver metastasis. This article illustrates the workflow for liver lesion detection, segmentation, classification, monitoring, and prediction of tumor recurrence and patient survival. Challenges are discussed, including ethical considerations, cohorting, data collection, anonymization, and availability of expert annotations. The practical guidance may be adapted to any project that requires automated medical image analysis.

Entities:  

Keywords:  Cohorting; Convolutional neural network; Deep learning; Medical imaging; Review article

Year:  2020        PMID: 32040647     DOI: 10.1186/s13244-019-0832-5

Source DB:  PubMed          Journal:  Insights Imaging        ISSN: 1869-4101


  20 in total

Review 1.  Machine Learning Algorithms in Neuroimaging: An Overview.

Authors:  Vittorio Stumpo; Julius M Kernbach; Christiaan H B van Niftrik; Martina Sebök; Jorn Fierstra; Luca Regli; Carlo Serra; Victor E Staartjes
Journal:  Acta Neurochir Suppl       Date:  2022

2.  Novel Feature Selection and Voting Classifier Algorithms for COVID-19 Classification in CT Images.

Authors:  El-Sayed M El-Kenawy; Abdelhameed Ibrahim; Seyedali Mirjalili; Marwa Metwally Eid; Sherif E Hussein
Journal:  IEEE Access       Date:  2020-09-30       Impact factor: 3.367

3.  Artificial intelligence in oral and maxillofacial radiology: what is currently possible?

Authors:  Min-Suk Heo; Jo-Eun Kim; Jae-Joon Hwang; Sang-Sun Han; Jin-Soo Kim; Won-Jin Yi; In-Woo Park
Journal:  Dentomaxillofac Radiol       Date:  2020-11-16       Impact factor: 2.419

4.  Focal Liver Lesion MRI Feature Identification Using Efficientnet and MONAI: A Feasibility Study.

Authors:  Róbert Stollmayer; Bettina Katalin Budai; Aladár Rónaszéki; Zita Zsombor; Ildikó Kalina; Erika Hartmann; Gábor Tóth; Péter Szoldán; Viktor Bérczi; Pál Maurovich-Horvat; Pál Novák Kaposi
Journal:  Cells       Date:  2022-05-05       Impact factor: 6.600

5.  COVID-19 Identification System Using Transfer Learning Technique With Mobile-NetV2 and Chest X-Ray Images.

Authors:  Mahmoud Ragab; Samah Alshehri; Gamil Abdel Azim; Hibah M Aldawsari; Adeeb Noor; Jaber Alyami; S Abdel-Khalek
Journal:  Front Public Health       Date:  2022-03-03

Review 6.  Artificial Intelligence for the Future Radiology Diagnostic Service.

Authors:  Seong K Mun; Kenneth H Wong; Shih-Chung B Lo; Yanni Li; Shijir Bayarsaikhan
Journal:  Front Mol Biosci       Date:  2021-01-28

7.  DeepDicomSort: An Automatic Sorting Algorithm for Brain Magnetic Resonance Imaging Data.

Authors:  Sebastian R van der Voort; Marion Smits; Stefan Klein
Journal:  Neuroinformatics       Date:  2021-01

8.  Validation of HER2 Status in Whole Genome Sequencing Data of Breast Cancers with the Ploidy-Corrected Copy Number Approach.

Authors:  Marzena Wojtaszewska; Rafał Stępień; Alicja Woźna; Maciej Piernik; Pawel Sztromwasser; Maciej Dąbrowski; Michał Gniot; Sławomir Szymański; Maciej Socha; Piotr Kasprzak; Rafał Matkowski; Paweł Zawadzki
Journal:  Mol Diagn Ther       Date:  2021-12-21       Impact factor: 4.074

9.  A Deep Neural Network-Based Method for Prediction of Dementia Using Big Data.

Authors:  Jungyoon Kim; Jihye Lim
Journal:  Int J Environ Res Public Health       Date:  2021-05-18       Impact factor: 3.390

Review 10.  Integrative radiogenomics for virtual biopsy and treatment monitoring in ovarian cancer.

Authors:  Paula Martin-Gonzalez; Mireia Crispin-Ortuzar; Leonardo Rundo; Maria Delgado-Ortet; Marika Reinius; Lucian Beer; Ramona Woitek; Stephan Ursprung; Helen Addley; James D Brenton; Florian Markowetz; Evis Sala
Journal:  Insights Imaging       Date:  2020-08-17
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