Literature DB >> 32039579

Drug Permeation against Efflux by Two Transporters.

Paramita Saha1, Samapan Sikdar1, Ganesh Krishnamoorthy1, Helen I Zgurskaya1, Valentin V Rybenkov1.   

Abstract

The development of new antibiotics against Gram-negative bacteria is hampered by the powerful protective properties of their cell envelope. This envelope consists of two membranes augmented by efflux transporters, which act in synergy to restrict cellular access to a broad range of chemical compounds. Recently, a kinetic model of this system has been constructed. The model revealed a complex, nonlinear behavior of the system, complete with a bifurcation, and matched very well to experimental uptake data. Here, we expand the model to include multiple transporters and apply it to an experimental analysis of antibiotic accumulation in wild-type and efflux-deficient Escherichia coli. We show that transporters acting across the inner and outer membranes have synergistic effects with each other. In contrast, transporters acting across the same membrane are additive as a rule but can be synergistic under special circumstances owing to a bifurcation controlled by the barrier constant. With respect to ethidium bromide, the inner membrane transporter MdfA was synergistic to the TolC-dependent efflux across the outer membrane. The agreement between the model and drug accumulation was very good across a range of tested drug concentrations and strains. However, antibiotic susceptibilities related only qualitatively to the accumulation of the drugs or predictions of the model and could be fit to the model only if additional assumptions were made about the physiological consequences of prolonged cell exposure to the drugs. Thus, the constructed model correctly predicts transmembrane permeation of various compounds and potentially their intracellular activity.

Entities:  

Keywords:  Gram-negative bacteria; antibiotic resistance; drug permeation; kinetics; multidrug efflux

Mesh:

Substances:

Year:  2020        PMID: 32039579      PMCID: PMC7150640          DOI: 10.1021/acsinfecdis.9b00510

Source DB:  PubMed          Journal:  ACS Infect Dis        ISSN: 2373-8227            Impact factor:   5.084


  41 in total

1.  Antibiotic susceptibility profiles of Escherichia coli strains lacking multidrug efflux pump genes.

Authors:  M C Sulavik; C Houseweart; C Cramer; N Jiwani; N Murgolo; J Greene; B DiDomenico; K J Shaw; G H Miller; R Hare; G Shimer
Journal:  Antimicrob Agents Chemother       Date:  2001-04       Impact factor: 5.191

Review 2.  Molecular basis of bacterial outer membrane permeability revisited.

Authors:  Hiroshi Nikaido
Journal:  Microbiol Mol Biol Rev       Date:  2003-12       Impact factor: 11.056

Review 3.  Small multidrug resistance proteins: a multidrug transporter family that continues to grow.

Authors:  Denice C Bay; Kenton L Rommens; Raymond J Turner
Journal:  Biochim Biophys Acta       Date:  2007-08-24

Review 4.  EmrE, a model for studying evolution and mechanism of ion-coupled transporters.

Authors:  Shimon Schuldiner
Journal:  Biochim Biophys Acta       Date:  2009-01-03

Review 5.  RND efflux pumps: structural information translated into function and inhibition mechanisms.

Authors:  Paolo Ruggerone; Satoshi Murakami; Klaas M Pos; Attilio V Vargiu
Journal:  Curr Top Med Chem       Date:  2013       Impact factor: 3.295

6.  One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products.

Authors:  K A Datsenko; B L Wanner
Journal:  Proc Natl Acad Sci U S A       Date:  2000-06-06       Impact factor: 11.205

7.  Evidence that TolC is required for functioning of the Mar/AcrAB efflux pump of Escherichia coli.

Authors:  J A Fralick
Journal:  J Bacteriol       Date:  1996-10       Impact factor: 3.490

Review 8.  Adaptive and mutational resistance: role of porins and efflux pumps in drug resistance.

Authors:  Lucía Fernández; Robert E W Hancock
Journal:  Clin Microbiol Rev       Date:  2012-10       Impact factor: 26.132

9.  Metabolic shutdown in Escherichia coli cells lacking the outer membrane channel TolC.

Authors:  Girija Dhamdhere; Helen I Zgurskaya
Journal:  Mol Microbiol       Date:  2010-06-01       Impact factor: 3.501

10.  Synergy between Active Efflux and Outer Membrane Diffusion Defines Rules of Antibiotic Permeation into Gram-Negative Bacteria.

Authors:  Ganesh Krishnamoorthy; Inga V Leus; Jon W Weeks; David Wolloscheck; Valentin V Rybenkov; Helen I Zgurskaya
Journal:  MBio       Date:  2017-10-31       Impact factor: 7.867

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  8 in total

Review 1.  Defining new chemical space for drug penetration into Gram-negative bacteria.

Authors:  Shibin Zhao; Justyna W Adamiak; Vincent Bonifay; Jitender Mehla; Helen I Zgurskaya; Derek S Tan
Journal:  Nat Chem Biol       Date:  2020-11-16       Impact factor: 15.040

2.  Mechanistic Duality of Bacterial Efflux Substrates and Inhibitors: Example of Simple Substituted Cinnamoyl and Naphthyl Amides.

Authors:  Napoleon D'Cunha; Mohammad Moniruzzaman; Keith Haynes; Giuliano Malloci; Connor J Cooper; Enrico Margiotta; Attilio V Vargiu; Muhammad R Uddin; Inga V Leus; Feng Cao; Jerry M Parks; Valentin V Rybenkov; Paolo Ruggerone; Helen I Zgurskaya; John K Walker
Journal:  ACS Infect Dis       Date:  2021-08-11       Impact factor: 5.578

3.  Property space mapping of Pseudomonas aeruginosa permeability to small molecules.

Authors:  Inga V Leus; Jon W Weeks; Vincent Bonifay; Yue Shen; Liang Yang; Connor J Cooper; Dinesh Nash; Adam S Duerfeldt; Jeremy C Smith; Jerry M Parks; Valentin V Rybenkov; Helen I Zgurskaya
Journal:  Sci Rep       Date:  2022-05-17       Impact factor: 4.996

4.  The Whole Is Bigger than the Sum of Its Parts: Drug Transport in the Context of Two Membranes with Active Efflux.

Authors:  Valentin V Rybenkov; Helen I Zgurskaya; Chhandosee Ganguly; Inga V Leus; Zhen Zhang; Mohammad Moniruzzaman
Journal:  Chem Rev       Date:  2021-02-17       Impact factor: 60.622

5.  Multidrug Efflux Pumps and the Two-Faced Janus of Substrates and Inhibitors.

Authors:  Helen I Zgurskaya; John K Walker; Jerry M Parks; Valentin V Rybenkov
Journal:  Acc Chem Res       Date:  2021-02-04       Impact factor: 22.384

Review 6.  Bacterial efflux transporters' polyspecificity - a gift and a curse?

Authors:  Helen I Zgurskaya; Giuliano Malloci; Brinda Chandar; Attilio V Vargiu; Paolo Ruggerone
Journal:  Curr Opin Microbiol       Date:  2021-04-30       Impact factor: 7.584

7.  Quantitative real-time analysis of the efflux by the MacAB-TolC tripartite efflux pump clarifies the role of ATP hydrolysis within mechanotransmission mechanism.

Authors:  Hager Souabni; William Batista Dos Santos; Quentin Cece; Laurent J Catoire; Dhenesh Puvanendran; Vassiliy N Bavro; Martin Picard
Journal:  Commun Biol       Date:  2021-04-22

8.  Loss of RND-Type Multidrug Efflux Pumps Triggers Iron Starvation and Lipid A Modifications in Pseudomonas aeruginosa.

Authors:  Justyna W Adamiak; Varsha Jhawar; Vincent Bonifay; Courtney E Chandler; Inga V Leus; Robert K Ernst; Herbert P Schweizer; Helen I Zgurskaya
Journal:  Antimicrob Agents Chemother       Date:  2021-07-12       Impact factor: 5.191

  8 in total

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