Literature DB >> 32035090

Resolution-based spectral clustering for brain parcellation using functional MRI.

Keith Dillon1, Yu-Ping Wang2.   

Abstract

BACKGROUND: Brain parcellation is important for exploiting neuroimaging data. Variability in physiology between individuals has led to the need for data-driven approaches to parcellation, with recent research focusing on simultaneously estimating and partitioning the network structure of the brain. NEW
METHOD: We view data preprocessing, parcellation, and parcel validation from the perspective of predictive modeling. The goal is to identify parcels in a way that best generalizes to unseen data. We utilize an uncertainty quantification approach from image science to define parcels as groups of unresolvable variables in the predictive model. Model parameters are chosen via cross-validation. Parcellation results are compared based on both their repeatability as well as their ability to describe held-out data.
RESULTS: The approach provides insight and strategies for open questions such as the choice of evaluation metrics, selection of model order, and the optimal tuning of preprocessing steps for functional imaging data. COMPARISON WITH EXISTING
METHODS: We compare new and established approaches using functional imaging data, where we find the proposed approach produces parcellations which are both more accurate and more repeatable than the current baseline clustering method. The metrics also demonstrate potential problems with overfitting for the baseline method, and with bias for other methods.
CONCLUSIONS: Clustering of resolution provides a principled and robust approach to brain parcellation which improves on the current baseline.
Copyright © 2020 Elsevier B.V. All rights reserved.

Entities:  

Keywords:  Brain parcellation; Connectomics; FMRI; Resolution; Spectral clustering

Mesh:

Year:  2020        PMID: 32035090      PMCID: PMC7061089          DOI: 10.1016/j.jneumeth.2020.108628

Source DB:  PubMed          Journal:  J Neurosci Methods        ISSN: 0165-0270            Impact factor:   2.390


  37 in total

1.  Automated Talairach atlas labels for functional brain mapping.

Authors:  J L Lancaster; M G Woldorff; L M Parsons; M Liotti; C S Freitas; L Rainey; P V Kochunov; D Nickerson; S A Mikiten; P T Fox
Journal:  Hum Brain Mapp       Date:  2000-07       Impact factor: 5.038

Review 2.  Brain templates and atlases.

Authors:  Alan C Evans; Andrew L Janke; D Louis Collins; Sylvain Baillet
Journal:  Neuroimage       Date:  2012-01-10       Impact factor: 6.556

Review 3.  Connectivity-based parcellation: Critique and implications.

Authors:  Simon B Eickhoff; Bertrand Thirion; Gaël Varoquaux; Danilo Bzdok
Journal:  Hum Brain Mapp       Date:  2015-09-27       Impact factor: 5.038

Review 4.  The parcellation-based connectome: limitations and extensions.

Authors:  Marcel A de Reus; Martijn P van den Heuvel
Journal:  Neuroimage       Date:  2013-04-01       Impact factor: 6.556

5.  A whole brain fMRI atlas generated via spatially constrained spectral clustering.

Authors:  R Cameron Craddock; G Andrew James; Paul E Holtzheimer; Xiaoping P Hu; Helen S Mayberg
Journal:  Hum Brain Mapp       Date:  2011-07-18       Impact factor: 5.038

6.  Connectivity-based parcellation of the human orbitofrontal cortex.

Authors:  Thorsten Kahnt; Luke J Chang; Soyoung Q Park; Jakob Heinzle; John-Dylan Haynes
Journal:  J Neurosci       Date:  2012-05-02       Impact factor: 6.167

7.  Defining functional SMA and pre-SMA subregions in human MFC using resting state fMRI: functional connectivity-based parcellation method.

Authors:  Jae-Hun Kim; Jong-Min Lee; Hang Joon Jo; Sook Hui Kim; Jung Hee Lee; Sung Tae Kim; Sang Won Seo; Robert W Cox; Duk L Na; Sun I Kim; Ziad S Saad
Journal:  Neuroimage       Date:  2009-10-23       Impact factor: 6.556

8.  Joint Spectral Decomposition for the Parcellation of the Human Cerebral Cortex Using Resting-State fMRI.

Authors:  Salim Arslan; Sarah Parisot; Daniel Rueckert
Journal:  Inf Process Med Imaging       Date:  2015

9.  Estimation of Dynamic Sparse Connectivity Patterns From Resting State fMRI.

Authors:  Biao Cai; Pascal Zille; Julia M Stephen; Tony W Wilson; Vince D Calhoun; Yu Ping Wang
Journal:  IEEE Trans Med Imaging       Date:  2018-05       Impact factor: 10.048

10.  Spatially constrained hierarchical parcellation of the brain with resting-state fMRI.

Authors:  Thomas Blumensath; Saad Jbabdi; Matthew F Glasser; David C Van Essen; Kamil Ugurbil; Timothy E J Behrens; Stephen M Smith
Journal:  Neuroimage       Date:  2013-03-21       Impact factor: 6.556

View more
  1 in total

1.  A novel 5D brain parcellation approach based on spatio-temporal encoding of resting fMRI data from deep residual learning.

Authors:  Behnam Kazemivash; Vince D Calhoun
Journal:  J Neurosci Methods       Date:  2022-01-11       Impact factor: 2.987

  1 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.