| Literature DB >> 32034211 |
Richard B Warner1,2,3, Abdo J Najy1, Young Suk Jung1,4, Rafael Fridman1,2, Seongho Kim2, Hyeong-Reh Choi Kim5.
Abstract
Tissue inhibitor of metalloproteinases-1 (Entities:
Mesh:
Substances:
Year: 2020 PMID: 32034211 PMCID: PMC7005868 DOI: 10.1038/s41598-020-58964-x
Source DB: PubMed Journal: Sci Rep ISSN: 2045-2322 Impact factor: 4.379
Figure 1Protein complementation assay (PCA) for the analysis of TIMP-1 interactions with CD63. (A) Schematic diagram of luciferase activity restoration by recombined Gaussia luciferase fragments through interactions between TIMP-1 and CD63. (B) Luciferase activity was measured as a read-out for interactions between the proteins of interest using cell lysates prepared from HEK293FT cells transfected with GLucN-TIMP-1 and CD63-GLucC (TIMP-1/CD63), GLucN-HNF4 and HNF4-GLucC (HNF4 dimer), GLucN-TIMP-1 and HNF4-GLucC (T1/HNF4), GLucN-HNF4 and CD63-GLucC (HNF4/CD63), or without transfection (293FT NT). (C) Immunoblot analysis of TIMP-1 or CD63 using conditioned medium or cell lysates prepared from parental HEK293FT cells without transfection (293FT NT) or transfected with wild type TIMP-1 (T1), GLucN-TIMP-1 (G-T1), wild type CD63 (CD63) or CD63-GLucC (CD63-G). Transferrin receptor (TfR) was used as loading control. Lanes of the cell lysate analysis were separated as different exposures for CD63 (CD63) and CD63-GLucC (CD63-G) probes were used in order to clearly see the molecular weight ranges of CD63 that is heavily glycosylated and thus exhibits a diffuse distribution (see full immunoblot in Supplemental Fig. 2).
Figure 2The C-terminus of TIMP-1 interacts with the extracellular large loop (LEL) of CD63. (A) 2-dimensional (left) and 3-dimensional (right) structure of TIMP-1, showing T1ΔC (17aa deletion, light orange) and T1ΔC2 (9aa deletion, light blue). 2D structural diagram of TIMP-1 adapted from Bodden et al.[21]. The N-terminal and C-terminal domains of TIMP-1 consist of loops 1–3 and 4–6, respectively. 3D structural diagram of TIMP-1 was made using PyMOL Molecular Graphics System based on the PDB entry 1UEA entered by Gomis-Ruth et al.[18]. The site occupied by MMP-3 catalytic domain in the crystal structure of MMP-3/TIMP-1 complex is shown in magenta in the N-terminal MMP inhibitory domain; helix 2 and helix 3 are shown in green and yellow respectively, and the connector between helices 2 and 3 is shown in orange; disulfide bridges are depicted in pale yellow. (B) PCA using cell lysates prepared from HEK293FT cells transfected with GLucN-TIMP-1 (T1), GLucN-T1ΔC (T1ΔC), or GLucN-T1ΔC2 (T1ΔC2) together with CD63-GLucC (CD63); GLucN-HNF4 and HNF4-GLucC (HNF4 dimer), GLucN-HNF4 and CD63-GLucC (HNF4/CD63), GLucN-TIMP-1 and HNF4-GLucC (T1/HNF4), GLucN-T1ΔC and HNF4-GLucC (T1ΔC/HNF4), GLucN-T1ΔC2 and HNF4-GLucC (T1ΔC2/HNF4), or without transfection (293FT NT). Immunoblot analysis of TIMP-1 using cell lysates or conditioned media from HEK293FT cells transfected with GLucN-TIMP-1 (T1), GLucN-T1ΔC (T1ΔC), GLucN-T1ΔC2 (T1ΔC2) or without transfection (293FT NT). (C) A diagram of CD63 depicting mutagenesis in the small extracellular loop (SEL) and the large extracellular loop (LEL) domains. Amino acid residues highlighted in color in the SEL were mutated to alanine residues and designated as 7AA, IIQ and TPGS accordingly. Separately, the entire LEL domain was removed for PCA domain analysis (ΔLEL). (D) PCA using cell lysates of HEK293FT cells transfected with luciferase fusion vectors as indicated (see Supplemental Fig. 1). Immunoblot analysis using anti-Gaussia Luciferase pAb in cell lysates of HEK293FT cells transfected with indicated wild type or mutant CD63-GLucC vectors (Right panel). Lanes are splitted because two separate immunoblots were used (see full immunoblot in Supplemental Fig. 2). Transferrin receptor (TfR) was used as loading control. For panels B and D, all values shown are the average of at least triplicate measurements. Error bars represent standard deviation. Significance was assessed as described in Materials and Methods with P < 0.05 being considered as significant.
Figure 3PCA measures TIMP-1 interactions with CD63 on the cell surface in TIMP-1’s C-terminus and CD63 LEL-dependent manners. (A) Luciferase activity was measured in cell lysates (top panel) or in live cells (bottom panel) of HEK293FT cells transfected with indicated luciferase fusion protein vectors or without transfection. (B) Luciferase activity was measured in cell lysates (top panel) or in live cells (bottom panel) of HEK293FT cells transfected with indicated luciferase fusion protein vectors. PCA for HNF4 dimerization was used as a positive control for interaction after cell compartment disruption (cell lysates) and as a negative control for extracellular biological interactions (live cells). Values shown are the average of at least triplicate measurements. Error bars represent standard deviation. Significance was assessed as described in Materials and Methods with P < 0.05 being considered as significant.
Figure 4Antibody against the C-terminus of TIMP-1 interferes with TIMP-1’s interaction with CD63 and the C-terminus of TIMP-1 is essential for the activation of intracellular signaling. (A) Anti-TIMP-1 antibodies, EP1549RY and 102 D1, were pre-incubated with or without synthetic peptides corresponding to the 9 C-terminal amino acid residues of TIMP-1. Immunoblot analysis of TIMP-1 was performed using TIMP-1 overexpressing HEK293FT cell lysates. The nitrocellulose membrane was stained with Ponceau S and cut into strips. Each strip was probed with the indicated antibody. β-actin was used for loading control. (B) PCA for TIMP-1/CD63 interactions was performed in the presence or absence of C-terminal and non-C-terminal TIMP-1 Abs (EP1549RY and 102 D1, respectively). Values are shown after normalization to treatment with each antibody buffer alone and are representative of multiple experiments (with 100% at 1.3E07 and 1.6E07). Error bars represent standard deviation. (C) Immunoblot analysis of phopho- and total ERK using cell lysates of MCF10A cells treated with conditioned media collected from HEK293FT cells transfected with control vector (Neo), TIMP-1 (T1), T1ΔC, and T1ΔC2 expression vectors.