Literature DB >> 32031932

Model Comparison Metrics Require Adaptive Correction if Parameters Are Discretized: Proof-of-Concept Applied to Transient Signals in Dynamic PET.

Heather Liu, Evan D Morris.   

Abstract

Linear parametric neurotransmitter PET (lp-ntPET) is a novel kinetic model that estimates the temporal characteristics of a transient neurotransmitter component in PET data. To preserve computational simplicity in estimation, the parameters of the nonlinear term that describe this transient signal are discretized, and only a limited set of values for each parameter are allowed. Thus, linear estimation can be performed. Linear estimation is implemented using predefined basis functions that incorporate the discretized parameters. The implementation of the model using discretized parameters poses unique challenges for significance testing. Significance testing employs model comparison metrics to determine the significance of the improvement of the fit accomplished by including a basis function, i.e. it determines the presence of a transient signal in the PET data. A false positive occurs when the bases overfit data that do not contain a transient component. The number of parameters in a model, p, is necessary to determine the degrees of freedom in the model. In turn, p is crucial for the calculation of model selection metrics and controlling the false positive rate (FPR). In this work, we first explore the effect of parameter discretization on FPR by fitting simulated null data with varying numbers of bases. We demonstrate the dependence of FPR on number of bases. Then, we propose a correction to the number of parameters in the model, peff , which adapts to the number of bases used. Implementing model selection with peff maintains a stable FPR independent of number of bases.

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Year:  2020        PMID: 32031932      PMCID: PMC7392400          DOI: 10.1109/TMI.2020.2969425

Source DB:  PubMed          Journal:  IEEE Trans Med Imaging        ISSN: 0278-0062            Impact factor:   10.048


  28 in total

1.  COMKAT: compartment model kinetic analysis tool.

Authors:  R F Muzic; S Cornelius
Journal:  J Nucl Med       Date:  2001-04       Impact factor: 10.057

2.  Estimating neurotransmitter kinetics with ntPET: a simulation study of temporal precision and effects of biased data.

Authors:  Marc D Normandin; Evan D Morris
Journal:  Neuroimage       Date:  2007-10-05       Impact factor: 6.556

3.  Simplified reference tissue model for PET receptor studies.

Authors:  A A Lammertsma; S P Hume
Journal:  Neuroimage       Date:  1996-12       Impact factor: 6.556

4.  Direct Estimation of Voxel-Wise Neurotransmitter Response Maps From Dynamic PET Data.

Authors:  Georgios I Angelis; John E Gillam; William J Ryder; Roger R Fulton; Steven R Meikle
Journal:  IEEE Trans Med Imaging       Date:  2018-11-28       Impact factor: 10.048

5.  A framework for designing dynamic lp-ntPET studies to maximize the sensitivity to transient neurotransmitter responses to drugs: Application to dopamine and smoking.

Authors:  Shuo Wang; Sujin Kim; Kelly P Cosgrove; Evan D Morris
Journal:  Neuroimage       Date:  2016-10-13       Impact factor: 6.556

6.  Sex differences in the brain's dopamine signature of cigarette smoking.

Authors:  Kelly P Cosgrove; Shuo Wang; Su-Jin Kim; Erin McGovern; Nabeel Nabulsi; Hong Gao; David Labaree; Hemant D Tagare; Jenna M Sullivan; Evan D Morris
Journal:  J Neurosci       Date:  2014-12-10       Impact factor: 6.167

7.  The use of spectral analysis to determine regional cerebral glucose utilization with positron emission tomography and [18F]fluorodeoxyglucose: theory, implementation, and optimization procedures.

Authors:  F Turkheimer; R M Moresco; G Lucignani; L Sokoloff; F Fazio; K Schmidt
Journal:  J Cereb Blood Flow Metab       Date:  1994-05       Impact factor: 6.200

8.  Creating dynamic images of short-lived dopamine fluctuations with lp-ntPET: dopamine movies of cigarette smoking.

Authors:  Evan D Morris; Su Jin Kim; Jenna M Sullivan; Shuo Wang; Marc D Normandin; Cristian C Constantinescu; Kelly P Cosgrove
Journal:  J Vis Exp       Date:  2013-08-06       Impact factor: 1.355

9.  Pharmacokinetic modeling of [11C]flumazenil kinetics in the rat brain.

Authors:  Isadora Lopes Alves; David Vállez García; Andrea Parente; Janine Doorduin; Rudi Dierckx; Ana Maria Marques da Silva; Michel Koole; Antoon Willemsen; Ronald Boellaard
Journal:  EJNMMI Res       Date:  2017-02-22       Impact factor: 3.138

10.  Voxelwise lp-ntPET for detecting localized, transient dopamine release of unknown timing: sensitivity analysis and application to cigarette smoking in the PET scanner.

Authors:  Su Jin Kim; Jenna M Sullivan; Shuo Wang; Kelly P Cosgrove; Evan D Morris
Journal:  Hum Brain Mapp       Date:  2014-04-03       Impact factor: 5.038

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  2 in total

1.  Assessment of transient dopamine responses to smoked cannabis.

Authors:  Katina C Calakos; Heather Liu; Yihuan Lu; Jon Mikael Anderson; David Matuskey; Nabeel Nabulsi; Yunpeng Ye; Patrick D Skosnik; Deepak Cyril D'Souza; Evan D Morris; Kelly P Cosgrove; Ansel T Hillmer
Journal:  Drug Alcohol Depend       Date:  2021-07-29       Impact factor: 4.852

Review 2.  Methods for Quantifying Neurotransmitter Dynamics in the Living Brain With PET Imaging.

Authors:  Jenny Ceccarini; Heather Liu; Koen Van Laere; Evan D Morris; Christin Y Sander
Journal:  Front Physiol       Date:  2020-07-21       Impact factor: 4.566

  2 in total

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